BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_XANP2 (30S ribosomal protein S9 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ GTGK  IN RD + Y    P+    I  P      E  YDV     GGGLSGQA A+  G+++AL     + RSPLKK G +TRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   37 YATGKRKNAVARVWVRPGTGKVTINDRDIEVYF-ARPVLRLMINQPFQAAAREGQYDVVCTVSGGGLSGQAGAVRHGISKALTYYEPELRSPLKKGGFITRDSRVVERKKYGRAKARRSFQFSKR 160          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEFS (30S ribosomal protein S9 OS=Pseudomonas fluorescens (strain SBW25) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRTLDNFF-GRETARMVVRQPLELTETVEKFDIYVTVIGGGVSGQAGAIRHGITRALMQYDETLRGALRKAGFVTRDAREVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PECCP (30S ribosomal protein S9 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G G  +IN R  ++Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGNGNIVINQRSLEQYF-GRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PARD8 (30S ribosomal protein S9 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = 2
Query:   98 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + +   GRRK A+ARV + EGTGK  IN R+ ++Y   + L    +K PL  L     YD+ +   GGG  GQ++A  L ++RAL+K++ + ++ L+ EG +TRD R VERKK G  KARK  Q+SKR
Sbjct:    2 EVVNAIGRRKAAVARVFVSEGTGKITINKRELEKYFPSSILQF-IVKQPLAKLNVAEQYDIKINLDGGGFKGQSEAARLAISRALIKINPEDKAVLRAEGFVTRDPRAVERKKPGRPKARKRFQFSKR 128          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_NITEC (30S ribosomal protein S9 OS=Nitrosomonas eutropha (strain C91) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A Q  +GTGRRK A+ARV ++ GTG   +N++ A EY          I+ PL   G  T+ D+ V   GGG SGQA A+  G+ RAL+   +  +S L K G +TRD+R VERKK G  KAR+  Q+SKR
Sbjct:    2 AIQYNYGTGRRKSAVARVFIKSGTGVITVNHKPADEYFS-RETGRMIIRQPLELTGNSTNLDIMVNIRGGGESGQAGAVRHGITRALIDYDETLKSVLSKAGFVTRDAREVERKKVGFRKARRRKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCGA (30S ribosomal protein S9 OS=Mycoplasma gallisepticum GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A  T  G GRRK + A V L  G+GK +IN R A++Y   N + +Q ++ PL      + YD+ V  +GGG +GQA AI LG+ARAL+ ++ + +  LK+  L+TRD+RV ERKK GL+ AR+APQ++KR
Sbjct:    3 AVVTFKGLGRRKSSTALVKLTPGSGKLVINNRKAEDYFP-NKIVIQDMRQPLEVTKTASIYDINVVVNGGGFTGQAGAIRLGIARALVNMNPELKKQLKQHKLVTRDARVKERKKFGLYGARRAPQFTKR 131          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAEIN (30S ribosomal protein S9 OS=Haemophilus influenzae GN=rpsI PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK  IN R+   Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKITINQRELDVYF-GRETARMVVRQPLELVXLTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_DESAP (30S ribosomal protein S9 OS=Desulforudis audaxviator (strain MP104C) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK AIARV L  G+G   +N ++   YL G       ++ PL   G    ++V     GGG+SGQA AI LG+ARAL++   + R  LKK G LTRD R+ ERKK GL KAR+APQ+SKR
Sbjct:    7 YGTGRRKNAIARVFLSPGSGTVQVNDKELGAYL-GRKTLEMIVRQPLEVTGTAGRFNVRATVSGGGISGQAGAIKLGIARALVQADPNLRPVLKKAGFLTRDPRMKERKKYGLKKARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CAMJR (30S ribosomal protein S9 OS=Campylobacter jejuni (strain RM1221) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  101 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            T + TG+RK AIA+V ++ G+GK  +N  D   +L G+      +  PL+    ETS D+     GGG S QA+A+  G++RAL  +  D R+ LK +GLLTRDSR VERKK G  KAR++PQ+SKR
Sbjct:    3 TTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGLLTRDSRTVERKKYGRRKARRSPQFSKR 129          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CAMJJ (30S ribosomal protein S9 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  101 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            T + TG+RK AIA+V ++ G+GK  +N  D   +L G+      +  PL+    ETS D+     GGG S QA+A+  G++RAL  +  D R+ LK +GLLTRDSR VERKK G  KAR++PQ+SKR
Sbjct:    3 TTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGLLTRDSRTVERKKYGRRKARRSPQFSKR 129          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_XANP21.360e-2349.6030S ribosomal protein S9 OS=Xanthobacter autotroph... [more]
RS9_PSEFS1.360e-2348.0030S ribosomal protein S9 OS=Pseudomonas fluorescen... [more]
RS9_PECCP1.360e-2343.0830S ribosomal protein S9 OS=Pectobacterium carotov... [more]
RS9_PARD81.360e-2343.7530S ribosomal protein S9 OS=Parabacteroides distas... [more]
RS9_NITEC1.360e-2345.3830S ribosomal protein S9 OS=Nitrosomonas eutropha ... [more]
RS9_MYCGA1.360e-2346.1530S ribosomal protein S9 OS=Mycoplasma galliseptic... [more]
RS9_HAEIN1.360e-2345.6030S ribosomal protein S9 OS=Haemophilus influenzae... [more]
RS9_DESAP1.360e-2349.6030S ribosomal protein S9 OS=Desulforudis audaxviat... [more]
RS9_CAMJR1.360e-2346.4630S ribosomal protein S9 OS=Campylobacter jejuni (... [more]
RS9_CAMJJ1.360e-2346.4630S ribosomal protein S9 OS=Campylobacter jejuni s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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