BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SODGM (30S ribosomal protein S9 OS=Sodalis glossinidius (strain morsitans) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  +IN R   +Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R+ L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSSARVFVKAGSGNIVINQRSLDQYF-GRETARMVVRQPLELVDMVGKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRADLRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SALAI (30S ribosomal protein S9 OS=Salinispora arenicola (strain CNS-205) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 62/122 (50.82%), Postives = 75/122 (61.48%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK AI RV +  G+G+   N R+ + Y     +  Q IK PLVT     ++DV     GGG +GQA A+ L +ARAL+    D R  LKK G LTRD+RV E KK GL KARKAPQYSKR
Sbjct:   34 GRRKEAIVRVRIVPGSGRITCNGRELEAYFPSK-VHQQLIKDPLVTTEKAETFDVIANLRGGGTTGQAGALRLAIARALIASEPDDRPALKKAGFLTRDARVKESKKYGLKKARKAPQYSKR 154          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RHOP2 (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G GK I+N R+ + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   35 YATGKRKDAVARVWIKPGAGKVIVNSREVEVYF-ARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HERAR (30S ribosomal protein S9 OS=Herminiimonas arsenicoxydans GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV ++ G+G+ ++N + A EY       L  I+ PL       ++D+ V  +GGG SGQA A+  G+ RAL+      +  L K G +TRD+R VERKK GL KAR+A Q+SKR
Sbjct:    7 YGTGRRKSAVARVFIKSGSGQIVVNGKPANEYFS-RETGLMVIRQPLELTNNVETFDIMVNVNGGGESGQAGAVRHGITRALIDYDATLKPELSKAGFVTRDAREVERKKVGLRKARRAKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAEDU (30S ribosomal protein S9 OS=Haemophilus ducreyi GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV ++ G+G   IN R  + Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYF-GRETSRMVVRQPLELVELLDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 131          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BORGA (30S ribosomal protein S9 OS=Borrelia garinii GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV ++EG+G   +N RD   Y+Q   L    +  PLV       YD+++  +GGG+SGQ+ AI  G++RAL ++ + ++  L+  G LTRDSR VERKK G  KARK+ Q+SKR
Sbjct:   14 GTGRRKSSVARVYIREGSGNIRVNNRDFDSYIQLENLRTMALS-PLVLTNTLGKYDLYINVYGGGISGQSGAIRHGISRALFELDESNKMILRSNGFLTRDSRRVERKKFGQKKARKSFQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PROMH (30S ribosomal protein S9 OS=Proteus mirabilis (strain HI4320) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+G  +IN R  + Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  RS L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGNIVINKRSLEVYF-GRETARMVVRQPLELVDMLGKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRSDLRKAGFVTRDARSVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_DESRM (30S ribosomal protein S9 OS=Desulfotomaculum reducens (strain MI-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 59/125 (47.20%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L  G GK ++N ++  +Y  G       ++ PL        +DV VK  GGG+SGQA A   G+ARAL++   + R  LK+ G LTRD R+ ER+K GL KAR+APQ+SKR
Sbjct:    7 YGTGRRKNAVARVYLVPGEGKVVVNNKEVLDYF-GRKTLDMVVRQPLELTNTTGRFDVLVKVVGGGVSGQAGATRHGLARALVQADPNLRPVLKRAGFLTRDPRMKERRKYGLKKARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BARBK (30S ribosomal protein S9 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ GTGK  +N ++ ++Y    P+    ++ P+V    +T YDV     GGGLSGQA AI  G+++AL       R+ LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   38 YATGKRKDAVARVWIKPGTGKITVNNKEFEQYF-ARPVLRMILRQPIVIAKRDTQYDVVATVAGGGLSGQAGAIRHGISKALTYYEPALRTILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RHOP5 (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G GK I+N R+ + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   35 YATGKRKDAVARVWIKPGAGKVIVNTREVEVYF-ARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTYFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SODGM3.958e-2343.0830S ribosomal protein S9 OS=Sodalis glossinidius (... [more]
RS9_SALAI3.958e-2350.8230S ribosomal protein S9 OS=Salinispora arenicola ... [more]
RS9_RHOP23.958e-2348.0030S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_HERAR3.958e-2344.8030S ribosomal protein S9 OS=Herminiimonas arsenico... [more]
RS9_HAEDU3.958e-2344.6230S ribosomal protein S9 OS=Haemophilus ducreyi GN... [more]
RS9_BORGA3.958e-2345.9730S ribosomal protein S9 OS=Borrelia garinii GN=rp... [more]
RS9_PROMH5.169e-2344.8030S ribosomal protein S9 OS=Proteus mirabilis (str... [more]
RS9_DESRM5.169e-2347.2030S ribosomal protein S9 OS=Desulfotomaculum reduc... [more]
RS9_BARBK5.169e-2347.2030S ribosomal protein S9 OS=Bartonella bacilliform... [more]
RS9_RHOP56.751e-2348.0030S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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