BQ622927

Overview
NameBQ622927
Unique NameBQ622927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Match: YSL2_ORYSJ (Metal-nicotianamine transporter YSL2 OS=Oryza sativa subsp. japonica GN=YSL2 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.562e-30
Identity = 59/107 (55.14%), Postives = 81/107 (75.70%), Query Frame = 3
Query:    3 NCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKF 323
            +CL L    F  +++INL+RD + +++  ++PLP AMA+PF +G  FAIDMCVGSL++F W KI+  ++    PAVASG ICGDGIW  PSS+L+LAKV+PP+CMKF
Sbjct:  564 HCLELSAGFFAFSVLINLMRDFLPRKYRDYVPLPTAMAVPFLVGANFAIDMCVGSLIVFAWHKINSKESALLVPAVASGFICGDGIWMFPSSLLSLAKVKPPICMKF 670          
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Match: YSL1_ORYSJ (Probable metal-nicotianamine transporter YSL1 OS=Oryza sativa subsp. japonica GN=YSL1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.334e-28
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 3
Query:    3 NCLLLCYVLFGAAIVINLIRDSIRKEWAR---FIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSR 332
            + + LC   F AA+ ++    + R    R   ++P PMAMAIPF++GP FAIDMCVGSLLL  W + D+  A      VASGLICG+G+W+LPS++LA+ KVQPP+CMKFLSR
Sbjct:  567 HAIALCAACFAAAVFLDTAGAAARAARWRVGGWVPNPMAMAIPFFVGPTFAIDMCVGSLLLMAWRRADRQGAATLAVVVASGLICGEGLWTLPSAVLAMLKVQPPICMKFLSR 679          
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Match: YSL3_ORYSJ (Probable metal-nicotianamine transporter YSL3 OS=Oryza sativa subsp. japonica GN=YSL3 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.885e-25
Identity = 53/112 (47.32%), Postives = 79/112 (70.54%), Query Frame = 3
Query:    3 NCLLLCYVLFGAAIVIN-LIRDSIRKEWA--RFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLS 329
            +C+  C V F   ++I+ ++  S ++ W+  R+IP    +A+PF+ G YF IDMCVGSLLL  W +++   A+    AVA+GLICG+G+++LPS++L + KVQPPMCMKFLS
Sbjct:  552 HCMTFCVVAFCVTVIIDAVVLVSQKRGWSIHRYIPSMTVIALPFFAGSYFTIDMCVGSLLLLAWTRMNAKSAEMLSSAVAAGLICGEGLFTLPSALLNMFKVQPPMCMKFLS 663          
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Match: YSL7_ORYSJ (Probable metal-nicotianamine transporter YSL7 OS=Oryza sativa subsp. japonica GN=YSL7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.229e-23
Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = 3
Query:    9 LLLCYVLFGAAIVINLIRD-SIRKEWA--RFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFL 362
            +LL  V F  A+ +++ R+ + RKEW   R+IP  + MAI F++ P   + MC+GSL+ ++WEK+D  +     PA+ASGLICGDG+ S+  S+L L   + P+C+KFLSR  N ++D FL
Sbjct:  556 MLLFKVFFVLALALSVFREVASRKEWRIRRYIPSTIGMAITFFMPPRVPVGMCIGSLVAYLWEKMDAGRGRMLSPALASGLICGDGVGSILLSMLTLMGARAPICIKFLSRGDNVKLDAFL 676          
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Match: YSL4_ORYSJ (Probable metal-nicotianamine transporter YSL4 OS=Oryza sativa subsp. japonica GN=YSL4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.396e-23
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    6 CLLLCYVLFGAAIVIN-LIRDSIRKEWAR--FIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFL-SRRTNARVDKFL 362
            C+ LC +     I I+ L+  S  K W    +IP    +A+PF+ G YF +DMC+G LLL +W+KID   A+    AVA+GLICG+G+++LPS++L + KV PPMCMKFL S +    VD FL
Sbjct:  554 CVELCVIAVLVTIAIDALVLVSQLKGWRLHLYIPSMTVIALPFFAGSYFTLDMCLGGLLLLLWKKIDTMSAEILSAAVAAGLICGEGLFTLPSALLNMFKVLPPMCMKFLPSGQEVEVVDSFL 676          
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Match: YSL18_ORYSJ (Probable metal-nicotianamine transporter YSL18 OS=Oryza sativa subsp. japonica GN=YSL18 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.603e-22
Identity = 51/122 (41.80%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    6 CLLLCYVLFGAAIVINLIRD-SIRKEWAR--FIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFL 362
            CL +    F  A+ +  +R+ +   +W    +IP    MA+ F L P  +IDMC+GSL++F+W + DK  +  FGP +ASGLICGDG++S+P ++LA   V PP+C++FL R  N ++D FL
Sbjct:  551 CLAISATFFVLALAVCAMREVAAHGKWRAEPYIPSVTGMAVSFLLVPAVSIDMCIGSLIVFLWNRNDKLGSQVFGPVLASGLICGDGLFSIPYALLARYDVTPPICIRFLGRVQNDKLDAFL 672          
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Match: YSL17_ORYSJ (Probable metal-nicotianamine transporter YSL17 OS=Oryza sativa subsp. japonica GN=YSL17 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.500e-20
Identity = 51/122 (41.80%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    9 LLLCYVLFGAAIVINLIRD-SIRKEWA--RFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEK-IDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFL 362
            +LLC + F  A+ ++  R+ + R+ W   R+IP  + +A+ F++ P   + M VG L L +W + +D   A    PAVASGLICGDG+ SL SS+L L + +PP+C+KF+SR  N ++D FL
Sbjct:  572 VLLCKLFFAMALALSAAREVAERRRWRALRYIPSTIGVAVAFFVPPRIPVGMAVGCLALHVWRRHVDAGGARLLLPAVASGLICGDGLGSLASSMLTLLRARPPICIKFVSRFENQKLDAFL 693          
The following BLAST results are available for this feature:
BLAST of BQ622927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YSL2_ORYSJ3.562e-3055.14Metal-nicotianamine transporter YSL2 OS=Oryza sati... [more]
YSL1_ORYSJ3.334e-2853.10Probable metal-nicotianamine transporter YSL1 OS=O... [more]
YSL3_ORYSJ5.885e-2547.32Probable metal-nicotianamine transporter YSL3 OS=O... [more]
YSL7_ORYSJ3.229e-2343.80Probable metal-nicotianamine transporter YSL7 OS=O... [more]
YSL4_ORYSJ9.396e-2346.34Probable metal-nicotianamine transporter YSL4 OS=O... [more]
YSL18_ORYSJ1.603e-2241.80Probable metal-nicotianamine transporter YSL18 OS=... [more]
YSL17_ORYSJ1.500e-2041.80Probable metal-nicotianamine transporter YSL17 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00018 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00018 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622927 ID=BQ622927; Name=BQ622927; organism=Citrus sinensis; type=EST; length=603bp
AGAATTGTCTCTTGCTTTGCTATGTGCTTTTCGGAGCAGCCATTGTGATA
AATCTGATTAGGGATTCAATACGCAAGGAGTGGGCAAGGTTCATTCCTCT
CCCAATGGCAATGGCAATTCCTTTTTACTTGGGGCCGTACTTTGCCATTG
ATATGTGTGTTGGAAGCCTGCTTTTGTTCATCTGGGAAAAGATAGACAAG
GCAAAAGCAGATGCTTTTGGTCCAGCAGTTGCTTCCGGTTTGATTTGTGG
CGATGGAATATGGAGTTTGCCCAGTTCCATACTTGCTCTAGCAAAGGTCC
AGCCGCCCATGTGCATGAAGTTTTTGTCAAGGAGAACCAATGCCAGGGTT
GATAAATTCTTAGGATTTTAATTTTCAGCCCTCGATGAATCCAGTTGAAG
TTCCACCATGCGCTTATCGTTGTTGAAGCATCCTCAACTTGTAAAATACC
GCTTCTTTTTACTTCTTTTCCACTTTTTCCTCGTGTGAAGTAGGATAGCT
TGTTTGTGCTGAAGTATATTATTGTACTGTAAAATCAGGTATAAACTCAT
GCTTTGGTTTGAATCCTGTACTGGCATAGAAAGTGAAAGGAAATGTCCAA
GCT
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