BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.772e-16
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L E +D      +  N P RMPI D +    +GTV +G+VE+G ++ GD ++  P     ++  I     ++  A PG+N+   + G+ ++DI  G VL           EF AQ+ +L+    ++ T GY  V H H     C  +EL
Sbjct:  205 WYKGPTLVEVIDTFNPPEKPTNLPLRMPIQDVYTITGVGTVPVGRVETGVMKPGDKVVFEPAGVSGEIKTIEAHHEQLPKAEPGDNVGFNVRGVGKKDIKKGDVLGHPDNIPTVAEEFTAQIVVLQ--HPSVMTVGYTPVFHAHTAQVACTFMEL 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEI 452
            W++GP L EAL+ +       + P R+PI D +    +GTV +G+VE+G+V  GD +   P+    +V  +      V  AGPG+N+   + GI ++DI  G V    +        F AQ+ +++    ++ TAGY  V H H     C I
Sbjct:  200 WFDGPSLLEALNNLPEPQPPTDAPLRLPIQDVYTISGIGTVPVGRVETGTVSPGDDVSFQPSDVGGEVKTVEMHHEEVDQAGPGDNVGFNVRGIGKDDIRRGDVCGPSSNAPTVAETFKAQVVVMQ--HPSVITAGYTPVFHAHTAQVACTI 349          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.729e-16
Identity = 47/155 (30.32%), Postives = 75/155 (48.39%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L  ALD  ++     + P R+PI D +    +GTV +G+VE+G +++G  +  MP     +V +I         A PG+N+   + GI + D+  G V   +  P     EF AQ+ +L+    ++ + GY  V H H     C   EL
Sbjct:  201 WYKGPTLLAALDLFKMPDMPTDKPLRLPIQDVYTISGVGTVPVGRVETGILKKGQKISFMPANVTGEVKSIEMHHEEFPEALPGDNVGFNVRGIAKNDVRRGDVCGPIENPPTVAEEFTAQVVVLQ--HPSVLSVGYTPVFHCHTSQTACMFTEL 353          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP + +AL+ +    +  N P R+PI D +    +GTV +G+VE+G +++G  +  MP   + ++ +I      +  A PG+N+   + GI + DI  G V      P     EFIAQ+ +L     +  T GY  V H H     C  VEL
Sbjct:  201 WYKGPTVLDALNALSEPEKPTNLPMRLPIQDVYSISGIGTVPVGRVETGIMKKGMKVSFMPANKEGEIKSIEMHHEEIPQALPGDNVGFNVRGIGKGDIRRGDVCGPSDVPPTVAEEFIAQVVVLH--HPSALTVGYTPVFHCHTAQIACSFVEL 353          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L E L+ + +  +    P R+P+ D +    +GTV +G+VE+G +++G  +  MP+ A  +V +I         A PG+N+   + GI + D+  G V     KP +   EF  Q+ +L+    +  T GY  V H H     C ++ +
Sbjct:  200 WYTGPALLECLNNLTVPSKPDTLPLRIPVQDAYTISGIGTVPVGRVETGIMKKGQKVTFMPSGATGEVKSIEMHHEEWDQAVPGDNIGWNVRGIGKNDVRRGDVCGPADKPPSVADEFTGQIVVLQ--HPSAITVGYTPVFHCHTAQTACTLMAI 352          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEK 503
            W++GP L EAL+ + +     +   R+PI D +    +GTV +G++E+G +  GD++   P+    +V  I      V +A PG+N+   + GI ++DI  G V      P +    F AQ+ +++    ++ TAGY  V H H     C I  +         ET E+
Sbjct:  200 WYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDVCGPADDPPSVADTFQAQVVVMQ--HPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEE 366          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEK 503
            W++GP L EAL+ + +     +   R+PI D +    +GTV +G++E+G +  GD++   P+    +V  I      V +A PG+N+   + GI ++DI  G V      P +    F AQ+ +++    ++ TAGY  V H H     C I  +         ET E+
Sbjct:  200 WYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDVCGPADDPPSVADTFQAQVVVMQ--HPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEE 366          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.066e-16
Identity = 55/174 (31.61%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGT--VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL-ATSNRSEDQETHEKESSL 515
            W+ G CL E +D  +   R  + PFR+ + D FKD G+   V GK+E+G V+ GD LL MP         I   D  V  A  G+++ + L G++   I  G +     +P+ A T F A++ I  +      T G+  +LH   V E   I  L +  N+S  + T +K   L
Sbjct:  459 WYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFNI--EVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLL 630          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.066e-16
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGT--VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL-ATSNRSEDQETHEKESSL 515
            W+ G CL E +D  +   R  + PFR+ + D FKD G+   V GK+E+G ++ GD LL MP         I   D  V  A  G+++ + L G++   I  G +     +P+ A T F A++ +  +      T G+  +LH   V E   I  L +  N+S  + T +K   L
Sbjct:  462 WYKGMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILVFNI--EVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLL 633          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGT--VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL-ATSNRSEDQETHEKESSL 515
            W+ G CL E +D  +   R  + PFR+ + D FKD G+   + GK+E+G ++ GD LL MP      V  I   D  V  A  G+++ + L G++   I  G +      P+ A T F A++ I  +      T G+  +LH   V E   I  L +  N+S  + T +K   L
Sbjct:  464 WYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKVPIKACTRFRARILIFNI--EIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFL 635          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A_META32.772e-1630.97Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_HALWD3.621e-1631.58Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_METLZ4.729e-1630.32Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METMJ6.176e-1631.61Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_METBU6.176e-1629.03Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_HALSA6.176e-1628.99Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS36.176e-1628.99Elongation factor 1-alpha OS=Halobacterium salinar... [more]
HBS1L_RAT8.066e-1631.61HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE8.066e-1630.46HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_PONAB1.376e-1531.03HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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