BQ622934

Overview
NameBQ622934
Unique NameBQ622934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:56..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 589
            ++S R+ +E K+ ++D P    A P        +++ W   I G   + + GGV+ + + F  DYP KPPK  F    FHPN+  +G++CL IL E+  W P++TI  VLL I  LL +PNP  P      H++ ++K +Y+   ++ ++ Y
Sbjct:    4 ISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVY 155          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 47/138 (34.06%), Postives = 83/138 (60.14%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 571
            A  R+ K+L +L   P T  +  P AED+ +++ T+  P +  Y GG F  + +  P++P +PPKV    KV+HPNI+  G++CL+IL+E W P L+++ V++ +  L  +PN  DPL  + AH   +++ +++   +
Sbjct:   25 AQLRVQKDLSELSL-PSTMKTHFPSAEDIMNFELTVR-PDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.148e-20
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  173 LKELKDLQK-DPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 571
            L+  KD+ + + PT C+       D+ ++  +I  P D  Y    F  TI+ P  YP+ PPKV   T V+HPNI+  G +CL+IL++ W P L I  V+  + +L  +PNPDDPL  + A +   +K  +EA  R
Sbjct:   80 LRAQKDIDEMEVPTGCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVR 213          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.806e-20
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  164 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 592
            KR++KELK+L        +  P  ED+ + +A + GP  +PY GG F   +    D+P  PPK  F TK+FHPN++  G IC++ LK+ W+  L +  +LL+I  LL  PN +  L  + + +   +   Y   A+ +T  +A
Sbjct:   12 KRVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKLFTSIHA 154          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  188 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 592
            DL K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P V F TK++HPN++  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   D+  YE   + + +KYA
Sbjct:   11 DLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEKYA 147          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  188 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 592
            D+ K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P V F TK++HPN++  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   D+  YE   + + +KYA
Sbjct:   11 DMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKYA 147          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.066e-19
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  230 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 592
            + + M  +    +GP D+PY  GV+ + +  P +YP+K P + F  K+FHPNI+ ++GSICLD++   WSP   +  ++   I  LL +PN  DPL  E A +   DK  YE   + +  KYA
Sbjct:   25 INDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKEYIDKYA 147          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.066e-19
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  167 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 571
            R+ K++ +L      S S     +D+ +++ +I  P D  Y  G F+ T    P YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  + A + + +   +E   R
Sbjct:   34 RLHKDISELNLPSSCSISFPNGKDDLMNFEVSIK-PDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVR 167          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 49/133 (36.84%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 556
            A  R+ K++++L+  P    +   +          I+ P +  Y GG F  T  F   YP  PPKV    K+FHPNI+ +G ICL+IL+E WSPAL +  ++L + SL  +PN +DPL  E A +   DK ++
Sbjct:   33 AKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEF 165          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 51/151 (33.77%), Postives = 85/151 (56.29%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPP----TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 595
            ASKR+ KEL+DLQK+ P      CS     +++  W A ++ P   PY    F + I FP +YPF+PP V F T+++HPN++ +G +CL I+ K+ W  +    +VL ++  L+  P P  P+  E+A     D   ++  A+ +T ++ +
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGV 149          
The following BLAST results are available for this feature:
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC9_DICDI1.645e-2033.55Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC12_YARLI1.645e-2034.06NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_DICDI2.148e-2037.04NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBE2S_DICDI2.806e-2034.27Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC5_ARATH6.250e-2035.77Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH6.250e-2035.04Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC8_YEAST1.066e-1937.40Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
RCE1_ARATH1.066e-1934.81NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBC12_CANGA1.819e-1936.84NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UB2L6_BOVIN1.819e-1933.77Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00025 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00025 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622934 ID=BQ622934; Name=BQ622934; organism=Citrus sinensis; type=EST; length=633bp
GAGAGGTCGGGACGGCCAGTAGCTGCCGCAGATCTGCTCCGAAGCCGTTC
CCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCACAAGTG
TTGCAGATCCTAGGTTTGTTGTAGCTTTAACTTTTAATAATCCGTTGAAG
CATCATGGCTTCGAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGG
ATCCTCCCACGTCTTGCAGCGCCGGTCCGGTGGCTGAAGACATGTTCCAC
TGGCAAGCAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGAGGTGT
ATTTTTGGTTACCATTCATTTTCCTCCGGATTATCCCTTCAAGCCCCCAA
AGGTTGCTTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCAATGGA
AGCATATGTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTTACCAT
TTCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAATCCTG
ACGACCCGCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACAAGGCC
AAATATGAAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATGGGATA
GTTGGTTTGGATATTGCAGAAATGGAACTCATT
back to top