BQ622939

Overview
NameBQ622939
Unique NameBQ622939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11237 contig Csv1_Contig11237:425..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622939 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.550e-11
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 1
Query:   91 LEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLN 309
            L G IP +  NLK L+FL L+ NKL G+IP  LT L +L    + +N L G IP        P  +F +N LN
Sbjct:  130 LTGRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQS--LFEIPKYNFTSNNLN 200          

HSP 2 Score: 32.7278 bits (73), Expect = 4.550e-11
Identity = 13/26 (50.00%), Postives = 20/26 (76.92%), Query Frame = 3
Query:   12 NDISGKIPKELGNLKSLVSMDMYQNK 89
            N I+G+IP++ GNL SL S+D+  N+
Sbjct:  104 NGITGEIPEDFGNLTSLTSLDLEDNQ 129          
BLAST of BQ622939 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 5.813e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   91 LEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP-VDGPFRSFPMESFENNKLNGPELQGL 330
            L G IP+SF  L++L+ L+L+ N+++G+IP ELT  + L   ++ NN + G IP +    RS  M     NKL G   Q L
Sbjct:  322 LTGTIPRSFGKLENLQELQLSVNQISGTIPEELTNCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQSL 402          

HSP 2 Score: 33.8834 bits (76), Expect = 5.813e-11
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 3
Query:    3 LYMNDISGKIPKELGNLKSLVSMDMYQN 86
            LY N ISG IP  +G LK L S+ ++QN
Sbjct:  269 LYQNSISGSIPTTIGGLKKLQSLLLWQN 296          
BLAST of BQ622939 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 7.535e-11
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   97 GEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD-GPFRSFPMESFENNKLNG 312
            G IPKSF NL +L+ L L++N +TGSIP  L+  + L  F +  N + G IP + G  +   +     NKL G
Sbjct:  337 GTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEG 409          

HSP 2 Score: 36.965 bits (84), Expect = 7.535e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 3
Query:    3 LYMNDISGKIPKELGNLKSLVSMDMYQN 86
            LY ND+SG +PKELG L++L  M ++QN
Sbjct:  282 LYDNDLSGTLPKELGKLQNLEKMLLWQN 309          
The following BLAST results are available for this feature:
BLAST of BQ622939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
Y5129_ARATH4.550e-1142.47Probable LRR receptor-like serine/threonine-protei... [more]
Y4265_ARATH5.813e-1139.51Probable LRR receptor-like serine/threonine-protei... [more]
RCH1_ARATH7.535e-1139.73LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00030 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00030 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622939 ID=BQ622939; Name=BQ622939; organism=Citrus sinensis; type=EST; length=526bp
AGCTTTACATGAATGACATAAGTGGGAAAATTCCGAAAGAGTTAGGTAAT
TTGAAAAGCCTTGTCAGCATGGATATGTATCAGAATAAACCTGGAAGGAG
AAATACCAAAGTCCTTTGCCAATTTGAAGTCACTTAAATTTCTGCGGTTG
AACAACAACAAACTAACAGGATCAATTCCGAGGGAGCTGACCACCCTGTC
GGACCTCAAAGTTTTTGATGTTTCTAACAATGGTCTCTGTGGGACAATCC
CTGTTGATGGTCCTTTTAGAAGCTTTCCTATGGAGAGTTTTGAAAATAAT
AAACTCAATGGACCAGAGCTGCAAGGACTGGTGCCTTATGATTTTGGATG
CTGAAGAAGGTTGAAAACCCTCCGTCTTCTATTGAAGACCATAATGTTAA
AGACTCGTATAGGGTAAAATTATATTGTGTGCATCAGCTTGATCGAATGG
CTAGATATATTATGTCAGCGGCAGTGACTGTTCATGTATGAAGTAACTAA
AGCAATTAAAATAAGATTATGTAGCT
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