BQ622940

Overview
NameBQ622940
Unique NameBQ622940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7725 contig Csv1_Contig7725:667..1260. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_VOLCA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Volvox carteri GN=PSBO PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.941e-49
Identity = 97/141 (68.79%), Postives = 108/141 (76.60%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLEQ 425
            GIDYAA TVQL GGERV FLFTIKQ    G  +N  G+F+VPSYRGSSFLDPKGRGGSTGYDNA+ALPA  R D E+L KEN+K+T +  G    SV K    TGE+ GVFESIQPSDTDLGAK PKD+KI G+WY QL Q
Sbjct:  155 GIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDNIKGDFVVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKSTKALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQLSQ 293          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.311e-49
Identity = 97/140 (69.29%), Postives = 108/140 (77.14%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 422
            GIDYAA TVQL GGERV FLFTIKQ    G  +   G+FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPA  R D E+L KEN+K T +  G    SV K  P TGE+ GVFESIQPSDTDLGAK PKD+K+ G+WYAQL+
Sbjct:  154 GIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 7.393e-41
Identity = 85/148 (57.43%), Postives = 107/148 (72.30%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 422
            G+D+ A+TVQL GGERVPFLFTIK LVA  +P         +F G F VPSYRG++FLDPKGRG  +GYDNA+ALPA  + D+EDL + N+K      GKI+L + K    +GE+ G FES QPSDTDLGA  PK+VKI+GI+YA++E
Sbjct:  128 GLDFQAITVQLPGGERVPFLFTIKNLVAQTQPGLSSLNTSTDFEGTFKVPSYRGAAFLDPKGRGVVSGYDNAVALPA--QADDEDLTRTNVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.541e-38
Identity = 86/147 (58.50%), Postives = 105/147 (71.43%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQL 419
            GID+  VTVQL GGE+VPF FTIK LV   +P         +F G+F VPSYRG++FLDPKGRG +TGYDNA+ALPA    D+ED A  N+K T    G I+L VTK    TGE+ GVF+S QPSDTDLGAK P +VKI+GI+YA++
Sbjct:  129 GIDFQPVTVQLPGGEQVPFFFTIKNLVGKTEPGFSSINSSIDFEGDFRVPSYRGATFLDPKGRGLATGYDNAVALPA--TADKEDYA--NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.797e-37
Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 422
            GID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQG++YA +E
Sbjct:  126 GIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.797e-37
Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 422
            GID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQG++YA +E
Sbjct:  126 GIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 77/148 (52.03%), Postives = 101/148 (68.24%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVAS--------GKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 422
            GID+ A+TV L GGE VPFLFT+K LVAS            +  G + VPSYR S+FLDPK RG +TGY++A+A+P+ G  D EDL KEN+K   +  G+I+L+V+K    TGEV GVF +IQPSDTD+G K   DVK+ G +Y ++E
Sbjct:  128 GIDFQAITVLLPGGEEVPFLFTVKGLVASTSEPATSINTSTDLRGGYRVPSYRTSNFLDPKARGLTTGYESAVAIPSAG--DAEDLTKENVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.673e-33
Identity = 73/148 (49.32%), Postives = 95/148 (64.19%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 422
            GID+  +TV L GGE VPF FT+K    + +P         +F G+F VPSYRG+ FLDPK RG  TGYDNA+ALP+       D  + N K T    G ++L VT+    TGE+ G+FES QPSDTDLGAK P DVK++GI+Y +++
Sbjct:  129 GIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPSAA-----DKFRTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVD 271          
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.506e-22
Identity = 64/127 (50.39%), Postives = 67/127 (52.76%), Query Frame = 3
Query:    3 GIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPK 383
            GIDYAAVTVQL GGERVPFLFTIK                               GGSTGYDNA+ALPAGGR                           SKPETGE+IGVFES+QPSDTDLGAK PK
Sbjct:   32 GIDYAAVTVQLPGGERVPFLFTIK-------------------------------GGSTGYDNAVALPAGGR---------------------------SKPETGEIIGVFESLQPSDTDLGAKTPK 100          
The following BLAST results are available for this feature:
BLAST of BQ622940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_VOLCA1.941e-4968.79Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_CHLRE3.311e-4969.29Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_ANASP7.393e-4157.43Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA51.541e-3858.50Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_THEEB3.797e-3754.73Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN3.797e-3754.73Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE73.008e-3452.03Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY35.673e-3349.32Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU4.506e-2250.39Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00031 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00031 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622940 ID=BQ622940; Name=BQ622940; organism=Citrus sinensis; type=EST; length=594bp
ATGGAATTGACTATGCTGCTGTGACAGTTCAGCTGGCTGGAGGCGAGCGT
GTGCCCTTCCTTTTCACCATCAAACAATTGGTAGCATCAGGCAAACCTGA
GAATTTCGGAGGAGAATTCCTGGTACCATCTTACCGTGGATCATCCTTCT
TGGACCCAAAGGGAAGGGGTGGTTCAACTGGTTATGACAATGCTATTGCA
TTGCCTGCCGGTGGAAGAGGGGACGAGGAAGATCTCGCCAAGGAGAATAT
CAAGAATACTTCATCTTCAACAGGGAAGATCACCCTCAGCGTTACCAAGA
GCAAGCCTGAGACCGGAGAGGTTATTGGAGTGTTTGAGAGCATTCAGCCA
TCTGATACTGATTTGGGAGCCAAGGTTCCAAAGGATGTTAAGATCCAGGG
TATCTGGTATGCACAGCTTGAGCAATAGAGCTTTTCTTGTATGAGTGTAC
TTATTCCTATTCAGATTTTGAAACATGTTGAAGGTGTTGCTAAACATTTC
TGTAATTCAATTTAGTAGCACTGAGAATGGTATCACGTCTGTATATTATC
ATGGCATGCTATAATAATGCTTGCAATTCAAAACAAAAAAAAAA
back to top