BQ622950

Overview
NameBQ622950
Unique NameBQ622950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    7 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            F + I    DYP+  PKV F T + H N+N  G ICL+ILK+  W+ +L I  ++ SI  LL  PNP+DP   E+A +Y+ D+  Y+   R + + ++
Sbjct:   56 FELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHS 153          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 252
            GVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   53 GVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 252
            GVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   53 GVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 252
            GVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   53 GVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            G+F V +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   61 GIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            G+F V +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   61 GIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   61 GIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 276
            G F  S +  P++P +PPKV    KV+HPNI+  G++CL+IL+E W P L+++ V++ +  L  +PN  DPL  + AH    +R +++   +
Sbjct:   69 GEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.881e-15
Identity = 35/101 (34.65%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            GV+ +++ +P +YP KPPKV F    +HPN+  +G+ICL IL E   W PA+T+ +++L +  LL  PNP+ P        +  ++A+Y+       ++Y+
Sbjct:   56 GVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.881e-15
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 291
            GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:   52 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQK 161          
The following BLAST results are available for this feature:
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UBC1_MIMIV1.103e-1538.78Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UB2G1_RAT1.103e-1537.11Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.103e-1537.11Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.103e-1537.11Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBE2S_DROPS1.440e-1541.41Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE1.440e-1541.41Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROAN1.440e-1541.41Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBC12_YARLI1.440e-1536.96NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC9_YEAST1.881e-1534.65SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UB2G2_BOVIN1.881e-1535.45Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00041 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00041 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622950 ID=BQ622950; Name=BQ622950; organism=Citrus sinensis; type=EST; length=529bp
GGTGTATTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCC
ACCGAAGGTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCA
ATGGTAGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTG
ACAATATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAA
CCCAGATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACA
GAGCCAAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATG
GGTTAAGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGG
TCCTATTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGA
TATTTGGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTT
TCCAATTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTGCAAAAT
GGAGCTGCCTTTGCCTTTAAAAAAAAAAA
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