BQ622950

Overview
NameBQ622950
Unique NameBQ622950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 7.148e-15
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    7 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 300
            F + I FPP+YPFKPP + F TK++HPN++ NG ICL I+  E W P     +VL ++  L+  PN  +PL  ++A +   +   +   A  +T ++ +
Sbjct:   51 FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            G+F + +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W P L I +VLL++  LL  PNP+  L  E   +       Y   A+ +T+ +A
Sbjct:   61 GIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQ 288
            G+F + +    D+P  PPK  F TK+FHPN+ +NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   58 GLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 303
            GVF + +    D+P  PP+  F TK+FHPN+   G IC+++LK  W   L +  VLL+I  LL  PNP+  L  E   +   D  +Y + A   T+ +AMG
Sbjct:   58 GVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMG 158          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQ 288
            G+F + +    D+P  PPK  F TK+FHPN+ +NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   58 GLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            GV+ V +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP DPL  + A MY     +Y+   + + QKYA
Sbjct:   49 GVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            GV+ V +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP DPL  + A MY     +Y+   + + QKYA
Sbjct:   49 GVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            GV+ V +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP DPL  + A MY     +Y+   + + QKYA
Sbjct:   49 GVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            GV+ V +     YP+K P + F  K++HPN++  +GS+CLD++ + WSP   +  +  + +  LL  PNP DPL  E A +   D+  YE   + + ++YA
Sbjct:   47 GVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--------WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 243
            G+F   I FPP+YP++PPK+ F ++++HPNI  +G +C+ IL           WSPA  I  VLLS+ SL  +PN D P   + A  Y+
Sbjct:   48 GLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYR 136          
The following BLAST results are available for this feature:
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UB2L6_HUMAN7.148e-1536.36Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBE2S_NEMVE9.336e-1538.38Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBE2S_HUMAN9.336e-1539.58Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_DANRE9.336e-1538.61Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBE2S_BOVIN9.336e-1539.58Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBE2H_MOUSE9.336e-1537.62Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN9.336e-1537.62Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN9.336e-1537.62Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC4_WHEAT9.336e-1534.65Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC_ASFK51.219e-1441.57Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00041 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00041 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622950 ID=BQ622950; Name=BQ622950; organism=Citrus sinensis; type=EST; length=529bp
GGTGTATTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCC
ACCGAAGGTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCA
ATGGTAGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTG
ACAATATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAA
CCCAGATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACA
GAGCCAAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATG
GGTTAAGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGG
TCCTATTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGA
TATTTGGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTT
TCCAATTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTGCAAAAT
GGAGCTGCCTTTGCCTTTAAAAAAAAAAA
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