BQ622952

Overview
NameBQ622952
Unique NameBQ622952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10231 contig Csv1_Contig10231:504..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: NLK_CAEBR (Serine/threonine kinase NLK OS=Caenorhabditis briggsae GN=lit-1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 45/147 (30.61%), Postives = 75/147 (51.02%), Query Frame = 2
Query:    8 SYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            ++ V T++YRAPE+++G   +    D+WSVGCI  EL   + LFQ    +E L M+  +LG           + A KY   GA+           +++++++L +           +  D +DLL  LL+++P ER+   EAL HP+
Sbjct:  425 THEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLG--------TPSQEAMKYACEGAKNHVLRAGPRAPNLQSLYRLSQ----------QTTDDAVDLLVKLLKFNPDERISVEEALSHPY 553          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: JNK_DROME (Stress-activated protein kinase JNK OS=Drosophila melanogaster GN=bsk PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 49/152 (32.24%), Postives = 69/152 (45.39%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD-------WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+  G  LF   ++++    +   LG      + R       Y     R         +PDG                PN   Q+    A D  +LL  +L  DP +R+   EAL+H +
Sbjct:  183 YVV-TRYYRAPEVILGMGYTENVDIWSVGCIMGEMIRGGVLFPGTDHIDQWNKIIEQLGTPSPSFMQRLQPTVRNYVENRPRYTGYSFDRLFPDGL--------------FPNDNNQNSRRKASDARNLLSKMLVIDPEQRISVDEALKHEY 319          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CSK2A_DICDI (Casein kinase II subunit alpha OS=Dictyostelium discoideum GN=casK PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 2
Query:    2 DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILIE-LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP--NLIMQHVDHSA-GDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            D++  V++R Y+ PE+++ +  ++Y  D+WS+GC+    L   +  F  H+N++ L  + ++LG              E+++   A LD          +  + K  + P    I +   H A  + ID L+ LLRYDPAERL  REA+ HP+F
Sbjct:  195 DYNVRVASRPYKGPELLVDMEDYDYSLDMWSLGCMFAGMLFQKDPFFHGHDNIDQLVKIVKILG-------------TEEFY---AYLDKYGIVVDHTILSIIGKHPKKPWSRFITKENQHLAVPEAIDFLEKLLRYDPAERLTTREAMEHPYF 332          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 45/150 (30.00%), Postives = 75/150 (50.00%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD-SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            +++ + T  YRAPEV+LG   ++   D+WSVGCI  EL + +A+FQ    L+ L  + ++ G     M                   WP  +T ++      WK    P+ +   V +     +DLL  +L+Y+PA+R+ A+ A+ HP+F
Sbjct:  178 YTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQAIFQGDSELQQLLHIFKLFGTPNEEM-------------------WPGVSTLKNWHEYPQWK----PSTLSSAVPNLDEAGVDLLSKMLQYEPAKRISAKMAMEHPYF 304          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CDC2_DROME (Cell division control protein 2 homolog OS=Drosophila melanogaster GN=cdc2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 47/152 (30.92%), Postives = 76/152 (50.00%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR---AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            +++ + T  YRAPEV+LG   ++ P D+WS+GCI  E+ + + LFQ    ++ L  M R+L      +                   WP G TS    +     W   +L N  ++++D +    IDL+Q +L YDP  R+ A++ L HP+F
Sbjct:  160 YTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATRKPLFQGDSEIDQLFRMFRILKTPTEDI-------------------WP-GVTSLPDYKNTFPCWSTNQLTNQ-LKNLDANG---IDLIQKMLIYDPVHRISAKDILEHPYF 287          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: MK08_DANRE (Mitogen-activated protein kinase 8 OS=Danio rerio GN=mapk8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 46/152 (30.26%), Postives = 70/152 (46.05%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD-------WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            YVV TR+YRAPEVILG+G+    D+WS+GCI+ E+  G  LF   ++++    +   LG      +++ ++    Y     R         +PD     DS                H    A    DLL  +L  D ++R+   EAL+HP+
Sbjct:  185 YVV-TRYYRAPEVILGMGYQANVDVWSIGCIMAEMVRGSVLFPGTDHIDQWNKVIEQLGTPSQEFMMKLNQSVRTYVENRPRYAGYSFEKLFPDVLFPADS---------------DHNKLKASQARDLLSKMLVIDASKRISVDEALQHPY 320          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: MK08A_CYPCA (Mitogen-activated protein kinase 8A OS=Cyprinus carpio GN=mapk8a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 47/152 (30.92%), Postives = 70/152 (46.05%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD-------WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            YVV TR+YRAPEVILG+G+    D+WSVGCIL E+   + LF   + ++    +   LG      +++ ++    Y     R         +PD     DS               +H    A    DLL  +L  D ++R+   EAL+HP+
Sbjct:  185 YVV-TRYYRAPEVILGMGYQANVDIWSVGCILAEMVRHKILFPGRDYIDQWNKVIEQLGTPTQEFMMKLNQSVRTYVENRPRYTGYSFEKLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVEEALQHPY 320          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: JNK1_CAEEL (Stress-activated protein kinase jnk-1 OS=Caenorhabditis elegans GN=jnk-1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 47/148 (31.76%), Postives = 66/148 (44.59%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS---AGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            YVV TR+YRAPEVILG+G+    D+WS+GCI  EL  G  LF   ++++    +   LG      + R       Y     R                +++L   N+     D S        DLL  +L  DP  R+   +ALRHP+
Sbjct:  278 YVV-TRYYRAPEVILGMGYKENVDVWSIGCIFGELIRGRVLFPGGDHIDQWTRIIEQLGTPDRSFLERLQPTVRNYVENRPRY-----------QATPFEVLFSDNMFPMTADSSRLTGAQARDLLSRMLVIDPERRISVDDALRHPY 413          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CKD18_RAT (Cell division protein kinase 18 OS=Rattus norvegicus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            +S  V T  YR P+V+LG   ++ P D+W VGCIL E+ +G+ LF      E L ++ R+LG                         WP G TS    RA      LP  ++ H      + I+LL  LL Y+   R+ A  AL HP+F
Sbjct:  274 YSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGTPTEE-------------------SWP-GVTSISEFRAYNFPRYLPQPLLSHAPRLDTEGINLLTSLLLYESKSRMSAEAALSHPYF 402          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CKB11_ORYSJ (Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp. japonica GN=CDKB1-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 46/150 (30.67%), Postives = 71/150 (47.33%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR-AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            +++ + T  YRAPEV+LG   ++   D+WSVGCI  E+   +ALF     L+ L  + R+LG                         WP     RD      WK    P ++ + V     + +DLL  +L+Y+PA R+ A+ A+ HP+F
Sbjct:  169 YTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSELQQLLHIFRLLGTPTEEQ-------------------WPGVTDLRDWHEFPQWK----PQILERQVPSLEPEGVDLLSKMLQYNPANRISAKAAMEHPYF 295          
The following BLAST results are available for this feature:
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
NLK_CAEBR1.014e-1130.61Serine/threonine kinase NLK OS=Caenorhabditis brig... [more]
JNK_DROME1.014e-1132.24Stress-activated protein kinase JNK OS=Drosophila ... [more]
CSK2A_DICDI1.014e-1130.52Casein kinase II subunit alpha OS=Dictyostelium di... [more]
CKB21_ARATH1.014e-1130.00Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]
CDC2_DROME1.014e-1130.92Cell division control protein 2 homolog OS=Drosoph... [more]
MK08_DANRE1.324e-1130.26Mitogen-activated protein kinase 8 OS=Danio rerio ... [more]
MK08A_CYPCA1.324e-1130.92Mitogen-activated protein kinase 8A OS=Cyprinus ca... [more]
JNK1_CAEEL1.324e-1131.76Stress-activated protein kinase jnk-1 OS=Caenorhab... [more]
CKD18_RAT1.324e-1132.89Cell division protein kinase 18 OS=Rattus norvegic... [more]
CKB11_ORYSJ1.324e-1130.67Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00043 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00043 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622952 ID=BQ622952; Name=BQ622952; organism=Citrus sinensis; type=EST; length=616bp
GGATCACAGCTATGTTGTATCAACACGACATTATCGTGCACCAGAGGTTA
TTTTAGGCCTTGGATGGAATTATCCTTGTGATTTGTGGAGTGTGGGTTGC
ATTCTTATAGAACTTTGCTCCGGCGAGGCTCTTTTTCAAACGCACGAGAA
TTTAGAGCATCTTGCCATGATGGAGAGGGTTTTAGGGCCTCTCCCCCACC
ATATGGTGATAAGAGCTGACCGCCGTGCTGAGAAATATTTTAGGAGAGGT
GCACGACTGGATTGGCCTGATGGTGCAACTTCGAGAGATAGCATGAGGGC
AGTTTGGAAACTTCTCCGTCTCCCGAACCTGATAATGCAGCATGTAGATC
ACTCTGCCGGTGATTTGATTGATCTCCTTCAGGGGCTCCTCCGATATGAT
CCAGCAGAGCGGCTCAAAGCCAGGGAAGCCCTAAGACATCCTTTCTTCAT
GAGAGATGTGAGAAGGTGTGGCTTTCCCTTGTAATTGCAAAGCCTCGTCT
TTGCTATTGACGAGCTTGTTCAATTTTAGAAAAGAAATAATACACAGCCA
TGCACGTGGGGAATGATATTCTATTGGCTCTTTTTTATACATTGCTGGTT
GATAGTAAAATTATGT
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