BQ622964

Overview
NameBQ622964
Unique NameBQ622964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2846 contig Csv1_Contig2846:69..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP_BACCL (Signal peptidase I OS=Bacillus caldolyticus GN=lepB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 1
Query:   19 FTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDE-----------------DFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWP 483
            F A+ V    + F+     +   SM PTL+ G+ ++  K+SY        DI++F A         +  + ++KR++   GD +      L VNG   DE                 DF LE +  +     VP G +FVLGDNR +S+DS ++G + I  IVG+  FRYWP
Sbjct:   15 FVAVCVVATLRLFVFSNYVVEGKSMMPTLESGNLLIVNKLSYDIGPIRRFDIIVFHA---------NKKEDYVKRVIGLPGDRIAYKNDILYVNGKKVDEPYLRPYKQKLLDGRLTGDFTLEEVTGKTR---VPPGCIFVLGDNRLSSWDSRHFGFVKINQIVGKVDFRYWP 174          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEPQ_BACNA (Signal peptidase I P OS=Bacillus subtilis subsp. natto GN=sipP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 54/176 (30.68%), Postives = 82/176 (46.59%), Query Frame = 1
Query:    1 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILE----------PLAYEMDPVVVPEGYVFVLGDNRNNSFDSHN-WGPLPIENIVGRSVFRYWPPSRV 495
            D  KA   AL + FL ++FL EP  +   SM PTL   +R+   K   +    +  DIV+          G      ++KR++   GD +E+    L VNG   +E+++ E           L  +  P+ VP+   FV+GDNR NS DS N  G    ++IVG     ++P  R+
Sbjct:   14 DWIKAILIALILVFLVRTFLFEPYIVQGESMKPTLFNSERLFVNKFVKYTGDFKRGDIVVLN--------GEEKKTHYVKRLIGLPGDTIEMKNDNLFVNGKRFNEEYLKENKKDAHDSDLNLTGDFGPIKVPKDKYFVMGDNRQNSMDSRNGLGLFNKKDIVGVEELVFFPLDRI 181          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEPS_BACSU (Signal peptidase I S OS=Bacillus subtilis GN=sipS PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 50/171 (29.24%), Postives = 78/171 (45.61%), Query Frame = 1
Query:    7 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI-----------LEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHN-WGPLPIENIVGRSVFRYWP 483
            AKA   A+ ++ L ++F+  P  +   SM PTL   +R+       +    +  DIV+     +           ++KRI+   GD VE+   +L +NG   DE ++            + L  +  PV VP+   FV+GDNR NS DS N  G    + I G S F ++P
Sbjct:   16 AKAIVIAVVLALLIRNFIFAPYVVDGDSMYPTLHNRERVFVNMTVKYIGEFDRGDIVVLNGDDVH----------YVKRIIGLPGDTVEMKNDQLYINGKKVDEPYLAANKKRAKQDGFDHLTDDFGPVKVPDNKYFVMGDNRRNSMDSRNGLGLFTKKQIAGTSKFVFYP 176          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEPV_BACSU (Signal peptidase I V OS=Bacillus subtilis GN=sipV PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 49/163 (30.06%), Postives = 75/163 (46.01%), Query Frame = 1
Query:   13 AAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVV--------------VPEGYVFVLGDNRNNSFDSHNWGPLPIENIVG 459
            A   ++ ++   K+ +     +   SMNPT   G+ +L  K S+ FK     DIV+F+ P            V IKR++   G+ ++    +L VNG    E F+    +      V              VP+G  FV+GDNR  SFDS ++GP+  +NIVG
Sbjct:    9 AGVVSVVLAIQVKNAVFIDYKVEGVSMNPTFQEGNELLVNKFSHRFKTIHRFDIVLFKGP---------DHKVLIKRVIGLPGETIKYKDDQLYVNGKQVAEPFLKHLKSVSAGSHVTGDFSLKDVTGTSKVPKGKYFVVGDNRIYSFDSRHFGPIREKNIVG 162          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP1_BACAM (Signal peptidase I OS=Bacillus amyloliquefaciens GN=sipA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 50/172 (29.07%), Postives = 76/172 (44.19%), Query Frame = 1
Query:    1 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILE----------PLAYEMDPVVVPEGYVFVLGDNRNNSFDSHN-WGPLPIENIVGRSVFRYWP 483
            D AKA   A+ ++ L ++FL  P  +   SM PTL   +RI       +    +   IV+               + ++KRI+   GD V++   +L +NG    E ++             L  +  PV VP+   FV+GDNR NS DS N  G    + I G S F ++P
Sbjct:   16 DWAKAIIIAVVLAVLIRNFLFAPYVVDGESMEPTLHDRERIFVNMTVKYISDFKRGQIVVLNG----------ENEHYVKRIIGLPGDTVQMKNDQLYINGKKVSEPYLAANKKKAKQDGYTLTDDFGPVKVPDDKYFVMGDNRRNSMDSRNGLGLFTKKQIAGTSKFVFFP 177          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEPP_BACNA (Signal peptidase I P OS=Bacillus subtilis subsp. natto GN=sipP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 49/173 (28.32%), Postives = 78/173 (45.09%), Query Frame = 1
Query:   10 KAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILE----------PLAYEMDPVVVPEGYVFVLGDNRNNSFDSHN-WGPLPIENIVGRSVFRYWPPSRV 495
            KA   A+ ++ L ++FL EP  +   SM+PTL   +R+   K   +    +  DI+I          G      ++KR++   GD VE+    L +NG    E ++             L  +  P+ VP+   FV+GDNR  S DS N  G    ++I G   F ++P S +
Sbjct:   18 KAIVIAVILALLIRNFLFEPYVVEGKSMDPTLVDSERLFVNKTVKYTGNFKRGDIIILN--------GKEKSTHYVKRLIGLPGDTVEMKNDHLFINGNEVKEPYLSYNKENAKKVGINLTGDFGPIKVPKDKYFVMGDNRQESMDSRNGLGLFTKDDIQGTEEFVFFPFSNM 182          
The following BLAST results are available for this feature:
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
LEP_BACCL2.288e-1431.40Signal peptidase I OS=Bacillus caldolyticus GN=lep... [more]
LEPQ_BACNA6.656e-1430.68Signal peptidase I P OS=Bacillus subtilis subsp. n... [more]
LEPS_BACSU1.483e-1329.24Signal peptidase I S OS=Bacillus subtilis GN=sipS ... [more]
LEPV_BACSU2.141e-1230.06Signal peptidase I V OS=Bacillus subtilis GN=sipV ... [more]
LEP1_BACAM2.797e-1229.07Signal peptidase I OS=Bacillus amyloliquefaciens G... [more]
LEPP_BACNA1.388e-1128.32Signal peptidase I P OS=Bacillus subtilis subsp. n... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00055 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00055 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622964 ID=BQ622964; Name=BQ622964; organism=Citrus sinensis; type=EST; length=552bp
GATGATGCCAAGGCCGCCTTTACGGCTTTGACTGTTAGTTTCTTGTTCAA
GTCGTTTTTGGCTGAGCCCAGATCCATTCCATCGGCTTCTATGAACCCTA
CCCTGGATGTTGGTGACCGGATTTTGGCAGAGAAGGTTTCATACTTTTTC
AAAAGGCCTGAGGTATCTGATATAGTGATCTTTAGGGCACCTCCGATCTT
GCAGGAAATTGGTTTCAGTTCTGGTGATGTATTCATAAAAAGGATAGTGG
CAACGGCTGGAGATTGTGTCGAAGTTCATGGTGGGAAACTGCTTGTAAAT
GGTGTTGCTCAAGATGAAGATTTCATTCTGGAGCCACTAGCTTATGAAAT
GGACCCAGTGGTTGTGCCTGAAGGTTATGTATTTGTATTGGGAGACAATC
GTAATAACAGCTTTGATTCTCATAACTGGGGTCCGCTTCCTATTGAGAAC
ATCGTTGGTAGGTCTGTGTTTCGTTATTGGCCTCCGTCCAGAGTATCCGA
CATGTTAGATGATCCTTATGCAATGAAGAATGCTGCTGTGCCAATCGCGT
GA
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