BQ622965 | Citrus Genome Database

Overview


Name	BQ622965
Unique Name	BQ622965
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	546

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ622965_ssr488	microsatellite	BQ622965_ssr488:488..499.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3160	contig	Csv1_Contig3160:331..876.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ622965 vs. ExPASy Swiss-Prot
Match: DEF04_ARATH (Defensin-like protein 4 OS=Arabidopsis thaliana GN=PDF2.1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 31/52 (59.62%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   85 VPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 240
            V  E R C SQS  F G C S  NC  VC NEGF GG CRG RRRCFC++ C
Sbjct:   26 VTVEARTCASQSQRFKGKCVSDTNCENVCHNEGFPGGDCRGFRRRCFCTRNC 77

[Close]

BLAST of BQ622965 vs. ExPASy Swiss-Prot
Match: DEF05_ARATH (Defensin-like protein 5 OS=Arabidopsis thaliana GN=PDF2.4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1

Query:   82 MVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 240
            +V  E R C++ S+ F+G C S  NCA VC NEGFS G CRG RRRC C++ C
Sbjct:   24 LVTVEARTCETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCTRPC 76

[Close]

BLAST of BQ622965 vs. ExPASy Swiss-Prot
Match: DF322_SOLTU (Defensin-like protein P322 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 1

Query:   91 AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 240
            AE R C+S SH F G C    NCA VC  E FSGG C G RRRCFC+K C
Sbjct:   25 AEARHCESLSHRFKGPCTRDSNCASVCETERFSGGNCHGFRRRCFCTKPC 74

The following BLAST results are available for this feature:

BLAST of BQ622965 vs. ExPASy Swiss-Prot

BLAST of BQ622965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13


Match Name	E-value	Identity	Description
DEF04_ARATH	1.221e-12	59.62	Defensin-like protein 4 OS=Arabidopsis thaliana GN...	[more]
DEF05_ARATH	3.554e-12	54.72	Defensin-like protein 5 OS=Arabidopsis thaliana GN...	[more]
DF322_SOLTU	7.917e-12	60.00	Defensin-like protein P322 OS=Solanum tuberosum PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00056 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00056 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ622965 ID=BQ622965; Name=BQ622965; organism=Citrus sinensis; type=EST; length=546bp
GAGCTAAAAGAAAAAACAAATATGAAGAGTTTCTTTGGGATTTTCTTGCT
GCTGCTCATTCTATTTGCTTCTCAAGAGATGATGGTGCCGGCAGAGGGTA
GGGTGTGTCAGTCACAGAGCCATCATTTCCATGGCGCATGCTTTAGCCAC
CACAACTGTGCTTTTGTCTGCAGAAACGAAGGCTTCTCTGGTGGCAAATG
CCGTGGAGTCCGTCGCCGCTGCTTTTGCTCAAAGCTTTGCTAATTTCCCA
TTGTCGGTCTTGCTTGTGTGCTCTCTTTTGCCACTTGTTCCTCAATAATG
CATGGCTGGCTACTCTTCGTGCAAGTTTTAAGTGCAGTGTCTTAGGGCTA
GCTTAATGTTAGTTATAAATAAGGAATGCTCTTTCGTTTTGGTTTTGCTT
AATTTGTGTATCATCTGGTATTGATACTCCAGCTGCTTGCCTAATGAAAG
AGCATATCGTCTTGGAGTTTTTCTTTCGCTTGGTTGGATGAATGAATGAG
TTTGAATTCCTATGGCCAATTCCGGATTTAGACCGGATCCAAACAC