BQ622966

Overview
NameBQ622966
Unique NameBQ622966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:428..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.333e-18
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:  127 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.247e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:  127 ARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.406e-13
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 267
            ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L + +  RA
Sbjct:  127 ARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214          
The following BLAST results are available for this feature:
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10L_BOVIN7.813e-1955.0060S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10L_MOUSE1.333e-1855.0060S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10_BOMMA9.551e-1753.7560S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_YEAST1.247e-1651.2560S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR6.406e-1343.1860S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00057 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00057 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622966 ID=BQ622966; Name=BQ622966; organism=Citrus sinensis; type=EST; length=426bp
TGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGA
CAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGT
TTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAG
TTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCC
AGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAAC
GCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGT
CTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTTCCATTTC
GTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTA
TTTGGTTTAACTATGTGATCCTTGCA
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