BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 1.437e-55
Identity = 99/143 (69.23%), Postives = 123/143 (86.01%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +YGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+ LEH D   ++DNEAIYD+C+R+LDI RP++ NLN L++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SY+PV+S  KA+HE  SV+EITN+ FEP + M
Sbjct:  161 EYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQM 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 1.877e-55
Identity = 101/143 (70.63%), Postives = 123/143 (86.01%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +Y+PVISA KA HE  SV E+T S FEP++ M
Sbjct:  160 DYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.451e-55
Identity = 98/143 (68.53%), Postives = 122/143 (85.31%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+ LEH D   ++DNEAIY++C+++LDI RP++ NLN L++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SYAP++S  KA+HE  SV EITN+ FEP + M
Sbjct:  162 DYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYEMCKKNLDISRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKSKAHHESNSVGEITNACFEPGNQM 304          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 2.451e-55
Identity = 100/143 (69.93%), Postives = 123/143 (86.01%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +YGKKS L F+VYP+PQVSTSVVEPYNSVL+TH+ L+++D   ++DNEA YDICRR+LDIERPTY NLNRL++QV+SS+TASLRF G+LNVD+ EFQTNLVPYPRIHF L +Y+P++SA KA+HE  SV EITN  FEP + M
Sbjct:  164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 4.181e-55
Identity = 98/143 (68.53%), Postives = 128/143 (89.51%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            ++GKKSKL F+VYP+PQVSTSVVEPYNS+L+TH+ LE +D + ++DNEAIYD+CR+ L +ERP+Y+NLNRL++QV+SS+TASLRFDGALNVD+ EFQTNLVPYPRIHF L++YAPVISA++A+HE LSV +IT+  FE ++ M
Sbjct:  163 EFGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLELSDCSFMVDNEAIYDLCRQKLHVERPSYSNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQM 305          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.589e-54
Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+ LEH D   ++DNEAIYD+CRR+LDI RP +++LN L++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SYAPV S  +A HE  SV+EIT S FEP + M
Sbjct:  161 DYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCRRNLDIARPNFSSLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPVFSKSRATHEANSVSEITQSCFEPGNQM 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 2.075e-54
Identity = 99/143 (69.23%), Postives = 122/143 (85.31%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y KKSKL F+VYP+PQVSTSVVEPYNSVL+TH+ L+  D   ++DNE+ YDICRR+LDIERP+Y NLNRL++QV+SS+TASLRF+G+LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA+HE  SV EITN  FEP + M
Sbjct:  160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.710e-54
Identity = 98/143 (68.53%), Postives = 123/143 (86.01%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +YGKKSKL F VYP+PQ+STSVVEPYN+VL+TH+ LEH D   ++DNEAIYDIC+R+L I RP+++NLN L++QVISS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SYAP++S ++A HE  SV+EITN+ FEP + M
Sbjct:  161 EYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDICKRNLGISRPSFSNLNGLIAQVISSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKKRATHESNSVSEITNACFEPGNQM 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 2.294e-53
Identity = 95/143 (66.43%), Postives = 122/143 (85.31%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DY KK KL F+VYP+P+V+T+VVEPYN+VL+THS LEH+DV  L+DNEA+YDICRR+LDI RP+Y +LNRL++QV+SS+T+SLRFDGALNVD+ EFQTNLVP+PR+H+ L SYAPVISA K+ HE    +E+T   FEP++ M
Sbjct:  161 DYAKKCKLEFSVYPAPRVATAVVEPYNAVLATHSTLEHSDVTFLVDNEAVYDICRRNLDIPRPSYEHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQM 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.487e-52
Identity = 98/143 (68.53%), Postives = 120/143 (83.92%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F VYP+PQ +TSVVEPY++ L+T++ LE  D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV E+T S FEP++ M
Sbjct:  160 DYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNTTLEQADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQM 302          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBA1_YEAST1.437e-5569.23Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA_GIBZE1.877e-5570.63Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_ASHGO2.451e-5568.53Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA1_SCHPO2.451e-5569.93Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA8_CAEEL4.181e-5568.53Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA_CANAL1.589e-5469.93Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA2_SCHPO2.075e-5469.23Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA3_YEAST2.710e-5468.53Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_NEUCR2.294e-5366.43Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA_SORMA1.487e-5268.53Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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