BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.915e-32
Identity = 63/135 (46.67%), Postives = 93/135 (68.89%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  PTY +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  ++V E+T+  F+  +MMA
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLATPTYGDLNHLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTARGSQQYRAITVPELTSQMFDAKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.915e-32
Identity = 63/135 (46.67%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            ++V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA
Sbjct:  167 YSVVPSPKVSDTVVEPYNATLSIHQLVENSDETFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_CANAL (Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.915e-32
Identity = 62/135 (45.93%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +V+EPYN+ LS H L+E++D    +DNEA+Y+IC+ +L + +P+Y  LN LVS V+S +T SLR+ G LN D+ +   NLVP+PR+HF +  YAP+ S        ++V E+T   F+  +MMA
Sbjct:  167 FSVVPSPKVSDTVIEPYNATLSVHQLVENSDETFCIDNEALYNICQNTLKLPQPSYAELNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTSMGSKSFRSVTVPELTQQMFDAKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.915e-32
Identity = 62/143 (43.36%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++  LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM
Sbjct:  158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPSFGELNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRALTVPELTQQMWDAKNMM 300          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.915e-32
Identity = 61/143 (42.66%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  +  + F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM
Sbjct:  158 EYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMM 300          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.915e-32
Identity = 63/144 (43.75%), Postives = 95/144 (65.97%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            +Y  +    ++V PSP VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  PTY +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF ++ +AP+ +     +  ++V E+T   F+  +MMA
Sbjct:  158 EYPDRMMCTYSVVPSPAVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSFVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTARGSQQYRAVTVPELTQQMFDAKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.808e-32
Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        L+V E+T   F+  +MMA
Sbjct:  158 EYPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLPDPGYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFIVGFAPLTSKGSHSFRSLTVPELTQQMFDAKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_DICDI (Tubulin beta chain OS=Dictyostelium discoideum GN=tubB PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.808e-32
Identity = 61/135 (45.19%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+ LS H L+E+ D  + +DNEA++DIC R+L + +P Y +LN L+S V+S +T  LRF G LN D+ +   NL+P+PR+HF L  +AP+ +   + + +++V E+T   F+  +MMA
Sbjct:  172 FSVVPSPKVSLTVVEPYNATLSVHQLVENADEVMCIDNEALHDICFRTLKLTQPNYGDLNHLISSVMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTAKGASSYNRITVPELTQQMFDAKNMMA 306          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.808e-32
Identity = 61/143 (42.66%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  ++ L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M+
Sbjct:  158 EYPDRTMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMV 300          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.808e-32
Identity = 65/143 (45.45%), Postives = 91/143 (63.64%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+ D    LDNEA+YDIC R+L +  PTY +LN LVS  I   T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MM
Sbjct:  158 EYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMM 300          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBB_UROFA2.915e-3246.67Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB_COCHE2.915e-3246.67Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB_CANAL2.915e-3245.93Tubulin beta chain OS=Candida albicans GN=TUB2 PE=... [more]
TBB4_WHEAT2.915e-3243.36Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB2_MAIZE2.915e-3242.66Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB1_SUIBO2.915e-3243.75Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_PNECA3.808e-3245.14Tubulin beta chain OS=Pneumocystis carinii GN=TUB-... [more]
TBB_DICDI3.808e-3245.19Tubulin beta chain OS=Dictyostelium discoideum GN=... [more]
TBB9_GOSHI3.808e-3242.66Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB6_ECTVR3.808e-3245.45Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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