BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.808e-32
Identity = 65/143 (45.45%), Postives = 91/143 (63.64%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+ D    LDNEA+YDIC R+L +  PTY +LN LVS  I   T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MM
Sbjct:  158 EYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMM 300          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.808e-32
Identity = 62/143 (43.36%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM
Sbjct:  158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRTLTVPELTQQMWDSKNMM 300          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+VLS H L+E++D    +DNEA+YDIC R+L +  PT+ +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF    +AP+ +   + +  ++VAE+T   F+  +MMA
Sbjct:  167 FSVVPSPKVSDTVVEPYNAVLSVHQLVENSDETFCIDNEALYDICFRTLKLSAPTHGDLNGLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFTVGFAPLTARGSSQYRAVTVAELTAQMFDAKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 66/145 (45.52%), Postives = 99/145 (68.28%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV-TEFQTNLVPYPRIHFMLSSYAPVIS-AEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  +  + F+V PSP+VS +VVEPYN+ LS H L+E++D ++ +DNEA+YDIC R+L +  PT+ +LN LV+ V+S +T  LRF G LN D+      NLVP+PR+HF +  +AP+ S   + Y + LSVA++T   F+  +MM
Sbjct:  158 EYPDRIMMTFSVIPSPRVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVAAVMSGVTCCLRFPGQLNSDLRNRLAVNLVPFPRLHFFMMGFAPLTSRGSQEYRQGLSVADVTQQMFDAKNMM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            +Y  +    ++V PSP+VS +VVEPYN  LS H L+E+ D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T SLRF G LN D+ +   NLVP+PR+HF +  +AP+ S     +  ++V ++T   F+  +MMA
Sbjct:  158 EYPDRMMCTYSVVPSPKVSDTVVEPYNCTLSIHQLVENADEVFCIDNEALYDICFRTLKLVTPSYGDLNHLVSAVMSGITCSLRFPGQLNADLRKLAVNLVPFPRLHFFMVGFAPLGSRGSQQYRSMTVNDLTQQMFDSKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 61/143 (42.66%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y  +  + F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM
Sbjct:  160 EYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 63/135 (46.67%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S ++ SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T    +P +MMA
Sbjct:  169 FSVVPSPKVSDTVVEPYNATLSMHQLVENSDKTFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVSTSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSPGAHSFRAVTVPELTQQMMDPKNMMA 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.495e-32
Identity = 62/135 (45.93%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+Y+IC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYEICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 6.495e-32
Identity = 62/135 (45.93%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+Y+IC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYEICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 8.483e-32
Identity = 61/144 (42.36%), Postives = 95/144 (65.97%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            +Y  +    ++V PSP+VS +V EPYN+VLS H L+++ D    LDNEA+YDIC ++L I RP++ +LN L++ V+S +T  LR+ G LN D+ +   NLVP+PR+HF  + +AP+ +        L+V E+T   F P+++MA
Sbjct:  160 EYPDRMLSTYSVLPSPKVSDTVTEPYNAVLSFHQLIDNADATYCLDNEALYDICEKTLKINRPSHQDLNSLIALVMSGVTTGLRYPGQLNGDLRKLAVNLVPFPRLHFFTTGFAPLFAKNSRAFHNLTVPELTQQLFNPANVMA 303          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBB5_ECTVR3.808e-3245.45Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]
TBB2_DAUCA3.808e-3243.36Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB_USTVI4.973e-3247.41Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB_LEIME4.973e-3245.52Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBBN_GUITH4.973e-3244.44Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]
TBB6_GOSHI4.973e-3242.66Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB1_TRIVI4.973e-3246.67Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB_UNCNE6.495e-3245.93Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB2_ERYPI6.495e-3245.93Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]
TBB2_GEOCN8.483e-3242.36Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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