BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17
Identity = 45/144 (31.25%), Postives = 84/144 (58.33%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMM 431
            Y KK    ++V+P+    +SVV  PYNSVL+   L+ + D  V++DN +++ I    L ++  ++   N ++S V+++ T +LR+ G +N D+     +LVP PR HF+++S+ P VI   +   ++ SV ++     +P ++M
Sbjct:  160 YPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIM 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 41/118 (34.75%), Postives = 73/118 (61.86%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYP--SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            +Y KK    F+V+P  + + S  VV+PYNS+L+   L+  TD  V++DN ++  I    L +  PT+   N ++S V+S+ T +LR+ G++N D+    ++L+  P+ HF+++SY P+
Sbjct:  160 NYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPI 277          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 46/123 (37.40%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLE-HTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 368
            Y KK    ++V+P+  + S  VV+PYNS+L+ +  L  + D  V+LDN A+  I    L I  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQA 283          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 41/115 (35.65%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    6 YGKKSKLGFTVYP-SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 347
            + KK    ++V+P +      VV PYNS+L+   L ++ D  V+LDN A+  I    L ++ P++   N+LVS V+S+ T +LR+ G ++ D+     +L+P PR HF+++SY P
Sbjct:  161 FPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTP 275          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 356
            Y KK    ++V+PS + S  VV+PYN++L+   L++++D +VL DN+A+ ++  R L     +Y   N+L++ V+SS+T SLRF   +   +    + LVP P +HF+  S+ P  S
Sbjct:  163 YHKKIVSTYSVFPSRE-SEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTS 278          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16
Identity = 46/145 (31.72%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP--VISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            Y KK    ++V+P+   +  VV+PYN +LS   L+ + D  V+LDN A+  I    L + +PT+  +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P  +I  +     + +V ++     +  ++MA
Sbjct:  161 YPKKLIQTYSVFPNE--NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMA 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 365
            Y KK    ++V+P    +  VV+PYN +LS   L  + D  V+LDN A+  I    L I +PT++ +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   +K
Sbjct:  161 YPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 365
            Y KK    ++V+P    +  VV+PYN +LS   L  + D  V+LDN A+  I    L I +PT++ +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   +K
Sbjct:  161 YPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            Y KK    ++V+P+   +  VV+PYN +LS   L+ + D  V+LDN AI  I    L +  PT + +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+
Sbjct:  161 YPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPL 273          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 365
            Y KK    ++V+P    +  VV+PYN +LS   L  + D  V+LDN A+  I    L I +PT++ +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   +K
Sbjct:  161 YPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBG_RETFI7.708e-1731.25Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_PLAFO2.243e-1634.75Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_ANEPH3.825e-1637.40Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG_NEUCR6.525e-1635.65Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG_ASHGO8.522e-1635.90Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG1_EUPCR8.522e-1631.72Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_EUPAE1.454e-1536.67Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_EUPOC1.454e-1536.67Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG2_EUPCR1.454e-1537.39Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG1_EUPOC1.454e-1536.67Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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