BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:574..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 341
            + KK    ++V+P+ Q    VV+PYNS+LS   L ++ D  V+LDN A+  I    L +  P++   N+LVS V+S+ T +LR+    + D+     +L+P PR HF+++SY
Sbjct:   96 FPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSY 207          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14
Identity = 40/121 (33.06%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE 362
            ++ KK    ++++P+   S+ VV +PYNSVL+ H L+E++D  V++DN ++      SL I  PT+ ++N L+S V+++ T+++RF G +          LVP   + F++ SY P +  E
Sbjct:  153 EFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDE 273          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 347
            Y K     ++V+PS Q S  VV PYN+VL+   L E  D +++ DN A+ ++  R+      +Y + N+L+S  +SS+T SLRF   +   +    + L+P P +HF+  ++ P
Sbjct:  163 YSKSFITTYSVFPSKQ-SEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTP 275          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   36 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            VYPS +    +  PYNS+L+   L EH D  + +DN++++DI  + +D+                            +  +  +N +V+ ++ SLT+S RF+G+LN+D+ E   NLVP+P++H+++SS  P+
Sbjct:  177 VYPSSEDDV-ITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISK-IDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPL 306          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.042e-13
Identity = 38/133 (28.57%), Postives = 73/133 (54.89%), Query Frame = 3
Query:   33 TVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            ++YPS +    +  PYNS+L+   L EH D  + +DN++++DI  + +D+                            +  +  +N +V+ ++ +LT+S RF+G+LN+D+ E   NLVP+P++H+++SS  P+
Sbjct:  176 SIYPSGEDDV-ITSPYNSILAMKELNEHADCVLPIDNQSLFDIISK-IDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPL 306          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.377e-12
Identity = 40/145 (27.59%), Postives = 77/145 (53.10%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMM 431
            Y KK    ++V+P+ + S  VV+ YN++L+   L+E +D  V+ DN ++ +I  +          + N+L+S +ISS+T S+RF   +   ++   + L+P P +HF+  S+ P  S    +   H+  S  ++     +PS+ +
Sbjct:  162 YPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSL 305          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 35/123 (28.46%), Postives = 62/123 (50.41%), Query Frame = 3
Query:   66 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            VV PYNS+L+   L+      V+ DN A+ DI      ++  T  ++N ++S  +S+ TA+LRF   L   +     +L P    HF+++SY P+    +    + S  ++     +P ++MA
Sbjct:  177 VVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQ-ISSRTSAIDVMKRLIQPQNIMA 298          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_POPEU (Tubulin alpha chain (Fragments) OS=Populus euphratica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.837e-11
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:  168 RSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPR 317
            RSLDIERPTYTNLNR              FDGA+NVDVTEFQTNLVPYPR
Sbjct:   15 RSLDIERPTYTNLNR--------------FDGAINVDVTEFQTNLVPYPR 50          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBG_COCHE3.238e-1536.61Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBG_ENCCU4.676e-1433.06Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_CANGA4.676e-1433.33Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBE_MOUSE4.676e-1430.30Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBE_HUMAN1.042e-1328.57Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBG_YEAST4.377e-1227.59Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_ENTHI9.751e-1228.46Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBA_POPEU2.837e-1170.00Tubulin alpha chain (Fragments) OS=Populus euphrat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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