BQ622975

Overview
NameBQ622975
Unique NameBQ622975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:588..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 2.499e-57
Identity = 103/113 (91.15%), Postives = 109/113 (96.46%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 357
            GYTKGDGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+   WDDHWIFWVGPF+GA LAA+YHQVVIRAIPFK
Sbjct:  173 GYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFK 285          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.712e-56
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 357
            GYTKGDGLGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI+YN+   W+DHWIFWVGPF+GA LAA+YH V+IRA+PFK
Sbjct:  173 GYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFK 285          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.371e-55
Identity = 101/113 (89.38%), Postives = 107/113 (94.69%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 357
            GYTKGDGLGAEI+GTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI+YN+   W DHWIFWVGPF+GA LAA+YH VVIRAIPFK
Sbjct:  173 GYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFK 285          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 3.989e-55
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPF 354
            GYTKGDGLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN +  W+DHWIFWVGP +GA LAA+YHQ++IRA+PF
Sbjct:  172 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRAMPF 283          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.980e-54
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 357
            GYTKGDGLGAEI+GTF+LVYTVFSATDAKR ARDSHVPILAPLPIGFAVFLVHLAT+ ITGTGINPARSLGAA+IYN+   W DHWIFWVGPF+GA LAA+YHQV+IRAIPFK
Sbjct:  172 GYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFK 284          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.586e-54
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 357
            GYTKGDGLGAE++GTFVLVYTVFSATDAKR+ARDSHVP LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY+   GW  HWIFWVGPF GA LAA+YHQVV+RAIPFK
Sbjct:  179 GYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFK 291          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.049e-51
Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 345
            GY+KG GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN D+ WDDHWIFWVGPF+GA +AA YHQ V+RA
Sbjct:  164 GYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRA 272          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 2.049e-51
Identity = 91/109 (83.49%), Postives = 102/109 (93.58%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 345
            GY++G GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IYNKD+ WDDHWIFWVGP VGA +AA YHQ ++RA
Sbjct:  169 GYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRA 277          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.017e-50
Identity = 92/109 (84.40%), Postives = 100/109 (91.74%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 345
            GY+KG GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD+ WDD WIFWVGP +GA +AA YHQ V+RA
Sbjct:  168 GYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.017e-50
Identity = 92/109 (84.40%), Postives = 100/109 (91.74%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 345
            GY+KG GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD+ WDD WIFWVGP +GA +AA YHQ V+RA
Sbjct:  169 GYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 277          
The following BLAST results are available for this feature:
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
PIP12_ORYSJ2.499e-5791.15Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE4.712e-5688.50Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ1.371e-5589.38Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP1_SOLLC3.989e-5588.39Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP11_MAIZE1.980e-5486.73Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE2.586e-5487.61Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP25_MAIZE2.049e-5184.40Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP21_MAIZE2.049e-5183.49Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP24_MAIZE1.017e-5084.40Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE1.017e-5084.40Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00066 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622975 ID=BQ622975; Name=BQ622975; organism=Citrus sinensis; type=EST; length=469bp
CCAACGTCGTAGCCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGA
GATTATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATG
CCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCA
ATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCCACTATCCCAATTACCGG
AACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATCATCTACAACA
AGGACCGCGGTTGGGATGACCACTGGATTTTCTGGGTGGGACCATTCGTT
GGAGCTGGACTCGCAGCTTTGTACCACCAAGTCGTGATCAGAGCCATTCC
CTTCAAATGAAGCTGATCGCTTCATCAACGTTCGTGATTGCACCTGCATT
TGTTTATGGCTGTTGCTGGTTTGCTTATGTGTATTATAAAATATTAATTA
GTCCTTTGTTCAAATCTGC
back to top