BQ622975

Overview
NameBQ622975
Unique NameBQ622975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:588..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   13 PHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIFWVGPFVGAGLAALYHQV 333
            P GY+    L  EII T   +  +  +T  +       VP+  AP+ IG A+ L+HL +IP+T T +NPARS G A+      GW     W+FW+ P +G  + A+  ++
Sbjct:  124 PGGYSLLSALLIEIILTAFFLVVILGSTHGR-------VPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG---GWALQQLWLFWLAPILGGAIGAVVWKI 223          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   31 GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 339
            G  +  E++ T  LV  VF++ D++++       I      G +V L HL  I  TG  +NPARS G A+I  K   +  HWIFWVGP  GA LA+L +  ++
Sbjct:  139 GQAVAVELVLTLQLVLCVFASMDSRQTLGSPAAMI------GTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGPLTGAVLASLIYNFIL 232          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 1
Query:   31 GDGLGA------EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 345
            G G+GA      E + TF L++ V++     R A     P+L  L +G  V    LA  P +G  +NPARS G A++      W DHW++WVGP +G  LA L +  +  A
Sbjct:  135 GAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRAVGGMGPLLVGLVVGANV----LAGGPFSGASMNPARSFGPALVAGV---WADHWVYWVGPLIGGPLAGLVYDGLFMA 238          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   31 GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 339
            G     EI  T   V  +F+  D +R+ +   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP +G GL +L +  ++
Sbjct:  128 GQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA----LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: AQPZ2_AGRT5 (Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 1
Query:   13 PHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIFWVGPFVGAGLAAL 321
            P GY+    L  EII T   +  +  +T  +  A        AP+ IG A+ L+HL +IP+T T +NPARS G A+      GW     W+FW+ P VG    A+
Sbjct:  124 PGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG---GWALQQLWLFWLAPIVGGAAGAV 219          
The following BLAST results are available for this feature:
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
AQPZ1_AGRT54.618e-1134.55Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
AQP6_RAT4.618e-1137.86Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
TIP44_MAIZE7.876e-1136.04Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
MIP_HUMAN7.876e-1133.98Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQPZ2_AGRT57.876e-1136.19Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00066 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622975 ID=BQ622975; Name=BQ622975; organism=Citrus sinensis; type=EST; length=469bp
CCAACGTCGTAGCCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGA
GATTATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATG
CCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCA
ATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCCACTATCCCAATTACCGG
AACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATCATCTACAACA
AGGACCGCGGTTGGGATGACCACTGGATTTTCTGGGTGGGACCATTCGTT
GGAGCTGGACTCGCAGCTTTGTACCACCAAGTCGTGATCAGAGCCATTCC
CTTCAAATGAAGCTGATCGCTTCATCAACGTTCGTGATTGCACCTGCATT
TGTTTATGGCTGTTGCTGGTTTGCTTATGTGTATTATAAAATATTAATTA
GTCCTTTGTTCAAATCTGC
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