BQ622975

Overview
NameBQ622975
Unique NameBQ622975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:588..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 339
            G +   G+  EII TF L++TV++   D K+ + D   P+L     GF V    LA    +G  +NPARS G A++      W DHW++WVGP +G GLA   ++ V+
Sbjct:  132 GVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 339
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GLA+L +  ++
Sbjct:  124 GVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLASLLYDFLL 223          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   13 PHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 339
            P G+    G+G       E++ TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +++  +   W  HWIFWVGP +GA LAAL ++  +
Sbjct:  130 PSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGPLLGAALAALVYEYAV 238          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   13 PHGYTKGD------GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIP 351
            P G+T G        L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+ G A++      W  HW++W+GP +GAG+A   ++ V+   P
Sbjct:  137 PMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALV---GWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQP 248          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   16 HGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 336
            +G T  + +  EI+ TF LVYTV++ A D K+      + I+APL IG  V    L      G  +NPA S G A++      W +HW++WVGPF+GA +AA+ +  +
Sbjct:  137 YGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG----DIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.099e-12
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 339
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L +  ++
Sbjct:  122 GVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.099e-12
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   19 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 339
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L +  ++
Sbjct:  124 GVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   16 HGYTKG----DGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAA-LYHQVVI 339
            HG   G     G+  EII TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++      +  +WI+W GP +G GLA  +Y  V I
Sbjct:  131 HGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAG---DFSQNWIYWAGPLIGGGLAGFIYGDVFI 237          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 PTS*PHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 336
            PT    G    +G+  EII TF LVYTV++ A D K+ +  +    +AP+ IGF V    L   P +G  +NPARS G A+       + + WI+WVGP VG GLA L ++ V
Sbjct:  129 PTHGLSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 44/109 (40.37%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   16 HGYTKG----DGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 327
            HG   G    +G+  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++      +   WI+WVGP VG  LA L +
Sbjct:  131 HGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDFSQIWIYWVGPLVGGALAGLIY 232          
The following BLAST results are available for this feature:
BLAST of BQ622975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
TIP41_ARATH6.443e-1337.96Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
MIP_RABIT6.443e-1336.45Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
TIPA_PHAVU8.415e-1338.79Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP32_ORYSJ8.415e-1335.29Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH8.415e-1337.96Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
MIP_RAT1.099e-1235.51Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE1.099e-1235.51Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP2_TOBAC1.435e-1240.35Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP22_ORYSJ1.435e-1240.71Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP22_ARATH1.435e-1240.37Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00066 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622975 ID=BQ622975; Name=BQ622975; organism=Citrus sinensis; type=EST; length=469bp
CCAACGTCGTAGCCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGA
GATTATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATG
CCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCA
ATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCCACTATCCCAATTACCGG
AACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATCATCTACAACA
AGGACCGCGGTTGGGATGACCACTGGATTTTCTGGGTGGGACCATTCGTT
GGAGCTGGACTCGCAGCTTTGTACCACCAAGTCGTGATCAGAGCCATTCC
CTTCAAATGAAGCTGATCGCTTCATCAACGTTCGTGATTGCACCTGCATT
TGTTTATGGCTGTTGCTGGTTTGCTTATGTGTATTATAAAATATTAATTA
GTCCTTTGTTCAAATCTGC
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