BQ622976

Overview
NameBQ622976
Unique NameBQ622976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1510..1995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.782e-35
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            +QPTVF DV+D M IA++EIFGPV  ILKFK  ++V+ RAN + +GLAA VFTK  D AN + +AL+AGTVW+NCY+VF A  PFGGYK+SG GRE G Y L AY +VK V   V
Sbjct:  398 IQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYNVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKV 512          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.940e-35
Identity = 70/111 (63.06%), Postives = 83/111 (74.77%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            +QPTVFS+V DDM IA++EIFGPVQ I+KFK  D+VI+RAN T +GLAA VFTK  D A T   AL+AGTVW+NCY  F A  PFGG+K+SG GRE G Y L  Y +VK V
Sbjct:  390 IQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTV 500          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.100e-34
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            +QPTVFSDV DDM IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AG+FT   D A T+  AL++GTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  382 IQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.100e-34
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            VQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AGVFTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  382 VQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.100e-34
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            +QPTVFSDV DDM IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AG+FT   D A T+  AL++GTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  382 IQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 5.461e-34
Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            VQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AGVFT   D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  382 VQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVWVNCYGVVTAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.461e-34
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            +QPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GL AG FTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  381 IQPTVFSNVSDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQCPFGGFKMSGNGREMGEYGFHEYTEVKTV 491          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 7.133e-34
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            VQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GLAAGVFTK  D A T+  AL+AG VW+NCY +  A  PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  382 VQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDDVIKRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.316e-34
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            +QPTVFS+V D+M IA++EIFGPVQ I+KFK  D+VI+RAN T +GLAAGVFTK  D A T+  AL+AGTVW+NCY       PFGG+K+SG GRE G Y L+ Y +VK V   +
Sbjct:  121 IQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTMKI 235          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.217e-33
Identity = 62/121 (51.24%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPVKNPAWL 365
            +QPT+F+DV +DM I QDEIFGPV S++KFK  ++ I+ AN T++GLAAG+ ++  D  NT+ R+++AG +W+NCY  FD   P+GGYK+SG  RE G+ +L+ YLQ K+VV P+ N  W+
Sbjct:  381 IQPTIFADVTEDMKIYQDEIFGPVMSLMKFKTVEEGIKCANNTKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYLQTKSVVMPLHNSPWM 501          
The following BLAST results are available for this feature:
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 341
Match NameE-valueIdentityDescription
ALDH2_PONAB3.782e-3560.87Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
AL1A1_CHICK4.940e-3563.06Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_SHEEP1.100e-3461.26Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_HUMAN1.100e-3463.06Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_BOVIN1.100e-3461.26Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A1_MACFA5.461e-3462.16Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HORSE5.461e-3461.26Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_RAT7.133e-3459.13Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
ALDH2_MACPR9.316e-3459.13Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
AL2C4_ARATH1.217e-3351.24Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622976 ID=BQ622976; Name=BQ622976; organism=Citrus sinensis; type=EST; length=485bp
TTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATGTTGATAGCA
CAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTTCAAGGAAAC
TGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTG
GGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATGCGTGCACTG
AGAGCTGGGACTGTATGGATTAACTGCTACGACGTGTTTGATGCTGCTAT
TCCTTTCGGTGGGTACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTT
ACAGCCTTAACGCTTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAG
AACCCAGCATGGCTCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGT
GTTTATGAATAAGGACAGCGTGCAATATCAGCTTGTAATTATGGAGCAAA
TGGATAATTTACTTTAAAAGAACTTACTTTCTTTT
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