BQ622976

Overview
NameBQ622976
Unique NameBQ622976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1510..1995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 141.354 bits (355), Expect = 2.075e-33
Identity = 67/115 (58.26%), Postives = 85/115 (73.91%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            VQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GLAAG+FTK  D A T+  AL+AG VW+NCY +  A  PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  382 VQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKRANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.540e-33
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            +QPTVFS+V DDM IA++EIFGPVQ I+KFK  D+VI+RAN T +GL AGVFTK  D A T+  AL+AGTVW+NCY    A  P GG+K+SG GRE G Y ++ Y +VK V   +
Sbjct:  382 IQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTMKI 496          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.623e-33
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            +QPT+FS+V DDM IA++EIFGPVQ I+KFK  D+VI+RAN T +GL AGVFTK  D A T+  AL+AGTVW+NCY    A  P GG+K+SG GRE G Y ++ Y +VK V   +
Sbjct:  382 IQPTIFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTMKI 496          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.038e-33
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV--KNP 356
            ++PTVFSDV D+M IA++EIFGPVQ ILKFK  ++VI+RAN T +GL A VFTK+ D A  +  AL +GTVWINCY+ F A  PFGG+K+SG GRE G Y+L  Y +VK V   +  KNP
Sbjct:  393 IKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLEEKNP 512          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.886e-33
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV--KNP 356
            ++PTVFSDV D+M IA++EIFGPVQ ILKFK  ++VI+RAN T +GL A VFTK+ D A  +  AL +GTVW+NCY+ F A  PFGG+K+SG GRE G Y+L  Y +VK V   +  KNP
Sbjct:  393 IKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWVNCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLDEKNP 512          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.345e-32
Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            VQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GLAAGVFTK  D A T+  AL+AG VW+NCY       PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  382 VQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIKRANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLAVPVQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMQI 496          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.295e-32
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 347
            VQPTVFS+V D+M IA++EIFGPVQ I+KFK  D+VI+RAN T +GLAAGVFTK  D A T+  AL+AGTVW+NCY       PFGG+K+SG GRE G   +  Y ++K V   +
Sbjct:  382 VQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDEVIKRANNTPYGLAAGVFTKDLDRAITVSSALQAGTVWVNCYLTLSVQCPFGGFKMSGNGREMGEQGVYEYTELKTVAMKI 496          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.719e-32
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V+PTVF+DV   M +A++EIFGPVQ I KFK+ D+VI RAN T +GLAA VFTK+ DTA  +  +L AGTVW+N Y+ F    PFGGYK+SG GRE G Y L A+L+VK V
Sbjct:  379 VEPTVFTDVTSSMRVAKEEIFGPVQLIFKFKDVDEVIERANDTSYGLAAAVFTKNIDTALKVANSLEAGTVWVNTYNHFAFQAPFGGYKMSGQGREFGHYGLEAFLEVKTV 489          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 8.719e-32
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV--KNP 356
            ++PTVFS+V D+M IA++EIFGPVQ ILKFK  ++VI+RAN T +GL A VFTK+ D A  +  AL +GTVWINCY+   A  PFGG+K+SG GRE G Y+L  Y +VK V   +  KNP
Sbjct:  393 IKPTVFSEVTDNMRIAKEEIFGPVQPILKFKSIEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWINCYNALYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLGDKNP 512          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.487e-31
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 353
            ++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A T+  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  399 IEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
The following BLAST results are available for this feature:
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 341
Match NameE-valueIdentityDescription
AL1A1_MOUSE2.075e-3358.26Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
ALDH1_ELEED3.540e-3358.26Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
ALDH1_MACPR4.623e-3357.39Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
AL1A3_MOUSE6.038e-3358.33Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A3_RAT7.886e-3357.50Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A7_MOUSE1.345e-3258.26Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A7_RAT2.295e-3257.39Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
ALDH_ENCBU8.719e-3259.46Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A3_HUMAN8.719e-3256.67Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
AL1A2_HUMAN1.487e-3156.30Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622976 ID=BQ622976; Name=BQ622976; organism=Citrus sinensis; type=EST; length=485bp
TTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATGTTGATAGCA
CAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTTCAAGGAAAC
TGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTG
GGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATGCGTGCACTG
AGAGCTGGGACTGTATGGATTAACTGCTACGACGTGTTTGATGCTGCTAT
TCCTTTCGGTGGGTACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTT
ACAGCCTTAACGCTTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAG
AACCCAGCATGGCTCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGT
GTTTATGAATAAGGACAGCGTGCAATATCAGCTTGTAATTATGGAGCAAA
TGGATAATTTACTTTAAAAGAACTTACTTTCTTTT
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