BQ622976

Overview
NameBQ622976
Unique NameBQ622976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.313e-31
Identity = 61/111 (54.95%), Postives = 88/111 (79.28%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF++V+D+M IA++EIFGPV + + ++  D+VI RAN + +GLAAG++T++   A+ +   L+AGTVW+NCY+VFDAA PFGGYK SG+GRE G Y+L+ Y +VK+V
Sbjct:  379 VAPTVFANVEDEMTIAKEEIFGPVLTAIPYETVDEVIERANHSEYGLAAGLWTENVKQAHYIADRLQAGTVWVNCYNVFDAASPFGGYKQSGLGREMGSYALDNYTEVKSV 489          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.652e-31
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            ++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A T+  A++AGTVWINCY+  +A  PFGG+K+SG GRE G   L  Y +VK V
Sbjct:  399 IEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTVDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGESGLREYSEVKTV 509          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.381e-31
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 353
            ++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A  +  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  399 IEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.381e-31
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 353
            ++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A  +  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  399 IEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.259e-30
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            +QPTVF+DV  DM I Q+EIFGPV ++ KFK+ +D I+  N T +GLAAG+ TK   TA  +  ALRAGTVW+N Y++    +PFGG+K SGIGRE G Y+L  Y Q+KAV
Sbjct:  378 IQPTVFTDVTSDMKINQEEIFGPVVTVQKFKDVEDAIKIGNSTSYGLAAGIHTKDVTTAIRVSNALRAGTVWVNSYNLIQYQVPFGGFKESGIGRELGSYALENYTQIKAV 488          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_OCHA4 (Betaine aldehyde dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=betB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.644e-30
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            ++PT+F+DV DDM IA++EIFGPV S+L+F + D+VI RAN T FGLAAGVFT      + ++  ++AGT WIN Y++    +PFGGYK SGIGRE GI +L  Y Q+K V
Sbjct:  366 IEPTIFTDVTDDMTIAREEIFGPVMSVLEFSDEDEVIARANDTEFGLAAGVFTADIARGHRVIGQIKAGTCWINAYNLTPVEVPFGGYKQSGIGRENGIAALAHYSQIKTV 476          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.161e-30
Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            ++PTVF +V+DDM IA++EIFGPVQ + KFK+ ++VI+RAN TR+GLAA VFT+  D A    +AL+AGTVW+N Y++     PFGG+K SG GRE G   L AY +VK V
Sbjct:  400 IKPTVFGNVQDDMRIAREEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKALYFSQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTV 510          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.066e-29
Identity = 65/119 (54.62%), Postives = 84/119 (70.59%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV--QPVKN 353
            ++PTVF DV+D M IA++EIFGPVQ + KFK+ ++VI+RAN TR+GLAA VFT+  D A    +AL+AGTVW+N Y++     PFGG+K SG GRE G   L AY +VK V    P KN
Sbjct:  400 IKPTVFGDVQDGMRIAKEEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLRAYTEVKTVTIKVPEKN 518          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_BRUMB (Betaine aldehyde dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=betB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.392e-29
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            ++PTVF+DV D M IA++EIFGPV S+L+F + D+VI RAN + FGLAAGVFT      + ++  ++AGT WIN Y++    +PFGGYK SGIGRE GI +L  Y Q+K V
Sbjct:  366 IEPTVFADVTDTMTIAREEIFGPVMSVLEFSDEDEVIARANDSEFGLAAGVFTADLSRGHHVIGQIKAGTCWINAYNLTSVEVPFGGYKQSGIGRENGIAALAHYSQIKTV 476          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.392e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV--QPVKN 353
            ++PTVF  V+DDM IA++EIFGPVQ + KFK+ ++VI RAN TR+GLAA VFT+  D A    +AL+AGTVW+N Y++     PFGG+K SG GRE G   L AY +VK V    P KN
Sbjct:  398 IKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKMEEVIERANTTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKN 516          
The following BLAST results are available for this feature:
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 341
Match NameE-valueIdentityDescription
ALDH4_BACSU3.313e-3154.95Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL1A2_CHICK5.652e-3157.66Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A2_RAT7.381e-3155.46Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE7.381e-3155.46Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
ALDH_ASPNG1.259e-3055.86Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
BETB_OCHA41.644e-3054.95Betaine aldehyde dehydrogenase OS=Ochrobactrum ant... [more]
AL1B1_RAT8.161e-3055.86Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1B1_MOUSE1.066e-2954.62Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
BETB_BRUMB1.392e-2954.05Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
AL1B1_PONAB1.392e-2954.62Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622976 ID=BQ622976; Name=BQ622976; organism=Citrus sinensis; type=EST; length=485bp
TTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATGTTGATAGCA
CAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTTCAAGGAAAC
TGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTG
GGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATGCGTGCACTG
AGAGCTGGGACTGTATGGATTAACTGCTACGACGTGTTTGATGCTGCTAT
TCCTTTCGGTGGGTACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTT
ACAGCCTTAACGCTTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAG
AACCCAGCATGGCTCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGT
GTTTATGAATAAGGACAGCGTGCAATATCAGCTTGTAATTATGGAGCAAA
TGGATAATTTACTTTAAAAGAACTTACTTTCTTTT
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