BQ622976

Overview
NameBQ622976
Unique NameBQ622976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1510..1995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_VIBHB (Betaine aldehyde dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 60/112 (53.57%), Postives = 78/112 (69.64%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 338
            V PTVF D +DDM   Q EIFGPV S+LKF + D+VI RAN T +GLAAGVFT++   A+ ++  ++AG  WIN +    A +P GGYKLSGIGRE G+ +L  Y Q K+V+
Sbjct:  364 VVPTVFIDCEDDMPHVQQEIFGPVMSVLKFSDEDEVIARANNTDYGLAAGVFTQNLSRAHRVIHQIQAGICWINTWGDSPAEMPVGGYKLSGIGRENGVETLTHYTQTKSVL 475          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            VQPTVF+DV D M +A++E+FGPV ++L F+  ++VI RAN T FGLAAGVFT     A+ ++  L+AGT WIN Y++     PFGG K+SG+GRE G  ++  Y QVK+V
Sbjct:  362 VQPTVFADVTDGMTLAREEVFGPVMAVLDFETEEEVIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKMSGVGRENGRAAVEHYTQVKSV 472          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_RHIEC (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            VQPTVF+DV DDM IA++EIFGPV S+L F + D+VI RAN + FGL+ GVFT     A+ ++  L AGT+WIN Y++    IPFGG K SG GRE  + +L  Y ++K V
Sbjct:  366 VQPTVFADVTDDMTIAREEIFGPVMSVLDFDDEDEVITRANASEFGLSGGVFTADLSRAHRVVDRLEAGTLWINTYNLCPVEIPFGGSKQSGFGRENSLAALEHYSELKTV 476          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_PSEFS (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF+D  D+M I ++EIFGPV SIL ++  ++VIRRAN T FGLAAG+ TK  + A+ ++  L AG  WIN +   DA +P GGYK SG+GRE GI SLN + ++K+V
Sbjct:  369 VAPTVFTDCTDEMTIVREEIFGPVMSILTYETEEEVIRRANDTDFGLAAGLVTKDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_ECOL6 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6 GN=betB PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF+D  DDM I ++EIFGPV SIL ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A IP GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  369 VAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEIPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_BURP8 (Betaine aldehyde dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            VQPTVFSD +DDM I ++EIFGPV SIL F + DDVI RAN T +GLAAGV T++   A+  +  L AG  WIN +    A +P GGYK SG+GRE GI +L  Y ++K+V
Sbjct:  368 VQPTVFSDCRDDMKIVREEIFGPVMSILSFVDEDDVIERANDTIYGLAAGVVTENLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGITTLEHYTRIKSV 478          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_VIBSL (Betaine aldehyde dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=betB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.702e-27
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 338
            V PTVF+D  DDM   Q EIFGPV S+LKF + DDVIRRAN T++GLAAGVFT++   A+ ++  ++AG  W+N +    A +P GGYKLSG+GRE G  +L  Y Q K+++
Sbjct:  364 VIPTVFTDCHDDMPHVQQEIFGPVMSVLKFTDEDDVIRRANDTQYGLAAGVFTQNLSRAHRVIHQMQAGICWVNTWGDSPAEMPVGGYKLSGVGRENGPETLLHYTQTKSIL 475          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_STRMK (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.222e-27
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVFSD +DDM I ++EIFGPV SIL + + D+V+RRAN T FGLAAGV +K    A+ ++  L AG  WIN +    A +P GGYK SG+GRE GI +L  Y ++K+V
Sbjct:  369 VLPTVFSDCRDDMTIVKEEIFGPVMSILAYDDEDEVVRRANDTTFGLAAGVVSKDISRAHRIIHRLEAGICWINTWGESPAEMPVGGYKESGVGRENGISTLGHYTRIKSV 479          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_RHIE6 (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.222e-27
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV---VQPVKNP 356
            VQPTVF+DV D+M IA++EIFGPV S+L F + D+VI RAN + FGL+ GVFT     A+ ++  L AGT+WIN Y++    IPFGG K SG GRE  + +L  Y ++K V   + PV+ P
Sbjct:  366 VQPTVFADVTDEMTIAREEIFGPVMSVLDFDDEDEVITRANASEFGLSGGVFTADLTRAHRVVDRLEAGTLWINAYNLAPVEIPFGGSKQSGFGRENSLAALEHYSELKTVYVGMGPVQAP 486          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_ECOHS (Betaine aldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.222e-27
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF+D +DDM I ++EIFGPV SIL ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  369 VAPTVFTDCRDDMTIVREEIFGPVMSILTYETEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
The following BLAST results are available for this feature:
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 341
Match NameE-valueIdentityDescription
BETB_VIBHB1.303e-2753.57Betaine aldehyde dehydrogenase OS=Vibrio harveyi (... [more]
BETB_RHOS51.303e-2752.25Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHIEC1.303e-2753.15Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
BETB_PSEFS1.303e-2753.15Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_ECOL61.303e-2753.15Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_BURP81.303e-2754.95Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
BETB_VIBSL1.702e-2752.68Betaine aldehyde dehydrogenase OS=Vibrio splendidu... [more]
BETB_STRMK2.222e-2753.15Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_RHIE62.222e-2750.41Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
BETB_ECOHS2.222e-2752.25Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622976 ID=BQ622976; Name=BQ622976; organism=Citrus sinensis; type=EST; length=485bp
TTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATGTTGATAGCA
CAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTTCAAGGAAAC
TGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTG
GGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATGCGTGCACTG
AGAGCTGGGACTGTATGGATTAACTGCTACGACGTGTTTGATGCTGCTAT
TCCTTTCGGTGGGTACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTT
ACAGCCTTAACGCTTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAG
AACCCAGCATGGCTCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGT
GTTTATGAATAAGGACAGCGTGCAATATCAGCTTGTAATTATGGAGCAAA
TGGATAATTTACTTTAAAAGAACTTACTTTCTTTT
back to top