BQ622976

Overview
NameBQ622976
Unique NameBQ622976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1510..1995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_RHISN (Betaine aldehyde dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            +QPTVF+DV D+M IA++EIFGPV  +L F +  +V+ RAN T FGL+AGVFT     A+ ++  L AGT+WIN Y++    IPFGG K SG GRE  + +LN Y ++K V
Sbjct:  366 IQPTVFADVTDEMTIAREEIFGPVMCVLDFDDEAEVVARANATEFGLSAGVFTADLTRAHRVVDQLEAGTLWINTYNLAPVEIPFGGSKQSGFGRENSVAALNHYTELKTV 476          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_CHRSD (Betaine aldehyde dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 56/109 (51.38%), Postives = 79/109 (72.48%), Query Frame = 3
Query:    9 PTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            PTVF+D  D+M + ++EIFGPV S+L F + ++VIRRAN T++GLAAGVF++S + A+ ++  L AG  WIN +    + +P GGYK SGIGRE G+ +LN Y Q K+V
Sbjct:  370 PTVFTDCTDEMRVVKEEIFGPVMSVLAFDDEEEVIRRANNTKYGLAAGVFSESLNRAHRVIHQLEAGICWINTWGESPSEMPVGGYKESGIGRENGVETLNHYTQTKSV 478          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_AGRT5 (Betaine aldehyde dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            VQPTVF+DV DDM IA++EIFGPV  +L F + D+V+ RAN T FGLA GVFT     A+ ++  L AGT+WIN Y++    IPFGG K SG GRE    +L  Y ++K V
Sbjct:  372 VQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFGRENSAAALEHYSELKTV 482          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            ++PT+FS+V +DM I Q+EIFGPV +I KFK   DVI+  N T +GLAA V T +  TA  +  ALRAGTVW+N Y+     +PFGGYK SGIGRE G  +L+ Y+Q K V
Sbjct:  377 IEPTIFSNVTEDMKIQQEEIFGPVCTISKFKTKADVIKIGNNTTYGLAAAVHTSNLTTAIEVANALRAGTVWVNSYNTLHWQLPFGGYKESGIGRELGEAALDNYIQTKTV 487          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_ECOLC (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=betB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.951e-27
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF+D  DDM I ++EIFGPV SIL ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  369 VAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGMMTLQSYTQVKSI 479          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_ECOL5 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.951e-27
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF+D  DDM I ++EIFGPV SIL ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  369 VAPTVFTDCSDDMTIVREEIFGPVMSILIYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_ECO55 (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.951e-27
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF+D  DDM I ++EIFGPV S+L ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  369 VAPTVFTDCSDDMTIVREEIFGPVMSLLTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 8.445e-27
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 338
            ++PTVFS+V D+M IA++EIFGPVQ ++KF++ DDVI R N + +G+AA +FT   +   T   A+  GT+W+N +  +    PFGG+K SGI RE G Y+L  Y +VK+V+
Sbjct:  377 IEPTVFSEVSDNMKIAKEEIFGPVQLLMKFRDLDDVIDRCNNSDYGMAAAIFTNDINRIMTFTNAVNTGTIWVNTFHHWFPQAPFGGFKTSGISREMGKYALREYTEVKSVI 488          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_RHOSK (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=betB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.445e-27
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            VQPTVF+DV D M +A +E+FGPV ++L F+  ++ I RAN T FGLAAGVFT     A+ ++  L+AGT WIN Y++     PFGG KLSG+GRE G  ++  Y QVK+V
Sbjct:  362 VQPTVFADVTDAMTLACEEVFGPVMAVLDFETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVEHYTQVKSV 472          
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Match: BETB_ECOSM (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=betB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.445e-27
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 3
Query:    3 VQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 335
            V PTVF+D +D+M I ++EIFGPV S+L ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  369 VAPTVFTDCRDEMTIVREEIFGPVMSLLTYESEDEVIRRANDTDYGLAAGIVTADLNLAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
The following BLAST results are available for this feature:
BLAST of BQ622976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 341
Match NameE-valueIdentityDescription
BETB_RHISN3.791e-2751.35Betaine aldehyde dehydrogenase OS=Rhizobium sp. (s... [more]
BETB_CHRSD3.791e-2751.38Betaine aldehyde dehydrogenase OS=Chromohalobacter... [more]
BETB_AGRT53.791e-2753.15Betaine aldehyde dehydrogenase OS=Agrobacterium tu... [more]
ALDH_ALTAL3.791e-2754.05Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]
BETB_ECOLC4.951e-2752.25Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOL54.951e-2752.25Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO554.951e-2751.35Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
CROM_ENTDO8.445e-2747.32Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
BETB_RHOSK8.445e-2752.25Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_ECOSM8.445e-2750.45Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622976 ID=BQ622976; Name=BQ622976; organism=Citrus sinensis; type=EST; length=485bp
TTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATGTTGATAGCA
CAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTTCAAGGAAAC
TGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTG
GGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATGCGTGCACTG
AGAGCTGGGACTGTATGGATTAACTGCTACGACGTGTTTGATGCTGCTAT
TCCTTTCGGTGGGTACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTT
ACAGCCTTAACGCTTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAG
AACCCAGCATGGCTCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGT
GTTTATGAATAAGGACAGCGTGCAATATCAGCTTGTAATTATGGAGCAAA
TGGATAATTTACTTTAAAAGAACTTACTTTCTTTT
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