BQ622981

Overview
NameBQ622981
Unique NameBQ622981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13137 contig Csv1_Contig13137:46..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.097e-26
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 3
Query:  189 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            +GAAYGTAKS VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:   31 LGAAYGTAKSAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLRGKVTSASAGYTLDKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGM 137          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  189 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGM 137          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  189 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGM 137          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 3
Query:  183 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            S +GAAYGTAKSGVG+++M VMRPEL+MK I+PVVMAG++ IYGL++AV+I+ G   +A +Y L+ G+                  AIGIVGDAGVR  AQQP+L+VGM
Sbjct:   25 SALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIA-GKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGM 132          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  183 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 130          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/129 (48.06%), Postives = 78/129 (60.47%), Query Frame = 3
Query:  123 SGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            SG E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:    6 SGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  183 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  183 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 62/129 (48.06%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  123 SGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            SG E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:    6 SGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  183 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131          
The following BLAST results are available for this feature:
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_ASCSU1.097e-2653.27V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CAEEL1.432e-2653.27V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR1.432e-2653.27V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_NEPNO1.871e-2655.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TORMA1.212e-2555.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP1.584e-2548.06V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT2.701e-2555.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE2.701e-2555.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HUMAN2.701e-2548.06V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN2.701e-2553.21V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622981 ID=BQ622981; Name=BQ622981; organism=Citrus sinensis; type=EST; length=608bp
TTTTTAGAAGTCATTAGTCTCCTCTTGAGAGAAAGAGCACCGGAACAAAT
AACGAAAACAAAACACACCGCCTCAAGTCTCAGATCCAGTCCGCATCTCC
CAAGATGTCTTCAACATTATTCAGTGGCGATGAAACCGCTCCATTCTTCG
GCTTTCTCGGCGCCGCTGCCGCCCTAGTCTTTTCCTGTATGGGAGCTGCG
TACGGAACGGCGAAGAGTGGCGTCGGTGTGGCGTCGATGGGAGTGATGAG
GCCGGAGCTTGTGATGAAATCGATCGTGCCCGTTGTTATGGCGGGAGTTT
TGGGTATTTACGGTTTGATTATTGCTGTTATTATTAGTACCGGAATTAAC
CCTAAGGCCAAATCTTATTACCTTTTCGATGGCTACGCGCATCTCTCTTC
TGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGCTGGTATGGCAATTGGGA
TCGTCGGTGATGCTGGTGTCAGAGCTAATGCTCAACAGCCGAAGCTTTTC
GTTGGGATGATCCTCATTCTGATCTTTGCCGAAGCGCTGGCACTTTATGG
ACTTATTGGTGGGATCATTCTTTCTTCTCGTGCTGGTCAGTCAAGAGCAG
ACTATAAG
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