BQ622981

Overview
NameBQ622981
Unique NameBQ622981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  192 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                 MAIGI GD GVR  AQQPKLFVGM
Sbjct:   36 GGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGM 139          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  183 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            SC+GA YGTA +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                  AIG+VGD GV++  +Q ++FV M
Sbjct:   25 SCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSM 132          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.003e-20
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  192 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                 M+IGI GD GVR  AQQPKLFV M
Sbjct:   34 GGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSM 137          
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.003e-20
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  192 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGM 509
            GAAYGTAKSG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                   IGIVGD GVR+   Q ++FVGM
Sbjct:   33 GAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGM 140          
The following BLAST results are available for this feature:
BLAST of BQ622981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_ENTHI6.885e-2148.11V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_SCHPO6.885e-2143.12V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTDI2.003e-2048.11V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_NEUCR2.003e-2043.52V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622981 ID=BQ622981; Name=BQ622981; organism=Citrus sinensis; type=EST; length=608bp
TTTTTAGAAGTCATTAGTCTCCTCTTGAGAGAAAGAGCACCGGAACAAAT
AACGAAAACAAAACACACCGCCTCAAGTCTCAGATCCAGTCCGCATCTCC
CAAGATGTCTTCAACATTATTCAGTGGCGATGAAACCGCTCCATTCTTCG
GCTTTCTCGGCGCCGCTGCCGCCCTAGTCTTTTCCTGTATGGGAGCTGCG
TACGGAACGGCGAAGAGTGGCGTCGGTGTGGCGTCGATGGGAGTGATGAG
GCCGGAGCTTGTGATGAAATCGATCGTGCCCGTTGTTATGGCGGGAGTTT
TGGGTATTTACGGTTTGATTATTGCTGTTATTATTAGTACCGGAATTAAC
CCTAAGGCCAAATCTTATTACCTTTTCGATGGCTACGCGCATCTCTCTTC
TGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGCTGGTATGGCAATTGGGA
TCGTCGGTGATGCTGGTGTCAGAGCTAATGCTCAACAGCCGAAGCTTTTC
GTTGGGATGATCCTCATTCTGATCTTTGCCGAAGCGCTGGCACTTTATGG
ACTTATTGGTGGGATCATTCTTTCTTCTCGTGCTGGTCAGTCAAGAGCAG
ACTATAAG
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