BQ622985

Overview
NameBQ622985
Unique NameBQ622985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.544e-20
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSEVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSL 326
            D+IIDT S  H   + + LLK+ G  V VG PS+    P   L  G K + GS  GG K+TQEML++C  H I   IE I ++ +N A+ERL K DVKYRFVID+ NSL
Sbjct:  241 DYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQLPIFPLVAGRKLIGGSNFGGLKETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANSL 349          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.634e-20
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSEVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 329
            D IIDT S  HP    + LLK  G  ++VG P +    P   L  G K ++GS  GG K+TQEM+++ A H I   IE +P++ VN A+ERL+K DV+YRFVID+ N+LK
Sbjct:  250 DGIIDTVSAAHPLLPLLGLLKSQGKMIMVGVPDKPLELPVFPLLQGRKILAGSCIGGMKETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLK 359          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.634e-20
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSE-VKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 323
            D+IIDT S  H     + LLK+ G  V VG PS+ ++ S   L  G K + GS  GG K+TQEML++C  H I   IE I +  +N A+ERL K DVKYRFVID+ NS
Sbjct:  248 DYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANS 355          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.634e-20
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSEVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 329
            D IIDT   +HP      LLK  G  V+VG P +    P  SL  G K + G++ GG K+TQEML++ A H I   +E IP++ VN A+ERL+K DV+YRFVIDI N+++
Sbjct:  249 DGIIDTVPVNHPLAPLFDLLKPNGKLVMVGAPEKPFELPVFSLLKGRKLLGGTINGGIKETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTMR 358          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 48/105 (45.71%), Postives = 75/105 (71.43%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSEVK-FSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDI 314
            D I++T S +   DAY+S+L++ G  V VG P++   +S  SL +G ++++GS+ GG ++TQEML++ A H I P+IE I  + V+EA ER+++ DV+YRFVIDI
Sbjct:  242 DVILNTVSANLDVDAYLSMLRIDGTLVSVGAPAKPDTYSVFSLIMGRRSIAGSLVGGIQETQEMLDFAAEHGIEPKIEVIGADQVDEAYERILRSDVRYRFVIDI 346          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-19
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSE-VKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 329
            D+IIDT +  H     + LLKV G  VLVG P + V+     L  G +TVSGS+TGG K+TQEM++ C  H I   IE +  + +N+AL RL + DV+YRFVI++    K
Sbjct:  250 DYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVRYRFVINVGGDSK 359          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19
Identity = 54/110 (49.09%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSEVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 329
            D IIDT S  HP    + LLK  G  V+VG P+E    P   L  G K V GS+ GG K+TQEM++    H I   IE I  + VN A+ERL K DVKYRFVID+ N++K
Sbjct:  245 DGIIDTVSATHPLLPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQEMVDLAGKHNITADIELISADYVNTAMERLAKADVKYRFVIDVANTMK 354          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.912e-19
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSE-VKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSL 326
            D +I+T S + P   Y++LLK  G  +LVG P   ++  P SL  G +T++GS  GG  DTQEM+E  A H +   IE I  ++VN A+ERL K DV+YRFVID+ N+L
Sbjct:  252 DGVINTVSANTPMAPYLALLKPNGKMILVGLPENPLEVPPFSLVHGNRTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVRYRFVIDVGNTL 360          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.967e-19
Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSEVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 323
            D+IIDT    HP + Y+SLLK+ G  +L+G   + ++F    + +G K+++GS  G  K+T+EML++C    +  QIE + ++ +N A+ERL K DV YRFV+D+  S
Sbjct:  246 DYIIDTVPVGHPLELYLSLLKIDGKLILIGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVSYRFVVDVAGS 353          
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.488e-19
Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 3
Query:    3 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGF-PSEVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 323
            D+I+DT    HP + Y++LLK  G  V++G  P  + F    L +G ++++GS  GG ++TQE L++CA  K+   IE + ++ +N A+ERL K DV+YRFV+D+  S
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPPLILGRRSIAGSFIGGMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353          
The following BLAST results are available for this feature:
BLAST of BQ622985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
MTDH1_STYHU1.544e-2049.54Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
MTDH_MESCR2.634e-2047.27Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_MEDSA2.634e-2049.07Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH_APIGR2.634e-2047.27Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
ADHA_BACSU7.664e-2045.71Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
CADH6_ORYSJ1.001e-1945.45Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH7_ARATH2.230e-1949.09Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH3_ORYSJ2.912e-1946.79Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH2_TOBAC4.967e-1940.74Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH_PINTA6.488e-1940.74Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00076 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00076 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622985 ID=BQ622985; Name=BQ622985; organism=Citrus sinensis; type=EST; length=616bp
TGGATTTCATCATCGACACAGCATCTGGTGATCATCCATTTGATGCGTAC
ATGTCACTGTTGAAGGTTGCTGGCGTTTATGTCCTAGTAGGATTTCCCAG
CGAAGTTAAATTTAGTCCCGCTAGTCTCAATATTGGTGCAAAAACTGTTA
GCGGTAGTGTAACAGGTGGTACCAAGGACACGCAAGAAATGTTGGAGTAT
TGTGCTGCTCATAAGATTTACCCGCAGATAGAAACAATTCCAATTGAGAA
TGTGAATGAAGCTCTTGAGAGGCTGATAAAGAGGGATGTAAAGTATCGAT
TTGTGATTGATATTCAGAACTCCTTGAAATAACATGGAGGCCAACCTCAC
TTTATAGCCACATATTGGAGAAGAGAGATCATATCCTTGTTCTCTGATTG
GCGATTCTTGATACAATAAACCTCTAAATCCTGCTAGTCATGCTTATGCT
GATAATTTTATGCTAATTAAGCATCACTACTTGTTCTTTCCTTTCTTAGT
TTTTGATTGTTTTGGGGAGACAATATGTTTAAGTACATATCTTTTACCTT
GAAGACAATGTCTTTCAAATAATCTTTAAGTAGAATAAATTTGAGTAAAA
AAAAAAAAAAAAAAAA
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