BQ622986

Overview
NameBQ622986
Unique NameBQ622986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13853 contig Csv1_Contig13853:464..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 8.280e-32
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  148 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            MA YK+ LI    G     E  +D+YILD AEE G+DLPYSCRAGACSTCAGK+  G +DQSD SFLDD+Q+EAGY+LTC++YP SDC I +H+EEEL
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.280e-32
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  154 VYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            +YKI+L+    G +       DQYILDAAEE GVDLPYSCRAGACSTCAGKLV GSVDQSD SFLD+ Q+  G++LTC++YPTSDCVIQ+H+EE L
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.081e-31
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 1
Query:  112 FGLKCSPNFQAS-MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            FGLK     + + MA YK+ LI        F+  +D Y+LD AEE G+DLPYSCRAG+CS+CAGK+V+GSVDQSD SFLDD+Q+EAG++LTC +YP++D  I++HKEEEL
Sbjct:   35 FGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.081e-31
Identity = 61/96 (63.54%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  151 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            A YK+KL+ P+G++ EF+  +D YILD AEE G+DLPYSCRAG+CS+CAGK+  G VDQSDGSFLDD Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.081e-31
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   82 LGSVKGISKTFGLKCSPNFQASM-----------AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            L S +  + +F L+ +P    +M           A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD+Q+  G++LTC++YPTSD VI++HKE++L
Sbjct:    5 LSSPRAPAFSFSLRAAPATTVAMTRGASSRLRAQATYNVKLITPEGEV-ELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.081e-31
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 1
Query:  148 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            MA YK+ L+    G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.081e-31
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 1
Query:  148 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            MA YK+ L+    G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.081e-31
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   37 PRNQLSRNLIKSPSSLGSVKGISKTFGLKC-SPNFQASMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            P+ Q    +   PS+ G        FGLK  S   + +MA YK+ L+ P G   EF+  +D YILDAAEE G+DLPYSCRAG+CS+CAGKL +GS++Q D SFLDD+Q++ G++LTC +YP SD  I++HKEEEL
Sbjct:   17 PKPQAPPMMAALPSNTGR-----SLFGLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.412e-31
Identity = 65/110 (59.09%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  112 FGLKCSPNFQAS-MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            FGLK +   + + MA YK+KLI P+G   EF+  ++ YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:   34 FGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 142          
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.412e-31
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1
Query:  148 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 438
            M  +K+ LI    G     E  +D+YILDAAEE G+DLPYSCRAGACSTCAGK+ +G+VDQSD SFLDD+Q++AGY+LTC++YPTSDC I +H+EE+L
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
The following BLAST results are available for this feature:
BLAST of BQ622986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNP48.280e-3264.29Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER2_CYACA8.280e-3267.71Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_SILPR1.081e-3158.18Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_COLES1.081e-3163.54Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER5_MAIZE1.081e-3152.31Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER1_SYNP61.081e-3164.29Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE71.081e-3164.29Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_SPIOL1.081e-3151.85Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER_CAPAN1.412e-3159.09Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_PLEBO1.412e-3163.27Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00077 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00077 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622986 ID=BQ622986; Name=BQ622986; organism=Citrus sinensis; type=EST; length=527bp
GTGACACTTAGTGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATCAACT
ATCAAGGAACTTAATCAAGAGCCCATCCTCACTTGGGTCTGTTAAGGGCA
TCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATG
GCTGTCTACAAGATTAAGCTGATTGGACCTAACGGTGAAGAGCATGAGTT
TGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAG
TCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGG
AAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGA
CAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTT
CAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTACTG
TCGGTTGATTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGT
ATGCCGATAAGGGTTCTCATGGACCTA
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