BQ622988
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 6.379e-65 Identity = 117/145 (80.69%), Postives = 125/145 (86.21%), Query Frame = 3 Query: 198 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 632 PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLADDP+ Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPE 145
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 9.211e-64 Identity = 123/182 (67.58%), Postives = 134/182 (73.63%), Query Frame = 3 Query: 90 VRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDP 629 +R + A GRITM +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI FDPLGLADDP Sbjct: 32 LRDIAAATNGRITMGN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDP 206
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.330e-62 Identity = 126/204 (61.76%), Postives = 142/204 (69.61%), Query Frame = 3 Query: 24 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDP 629 +T+ ++ + F GQT + +N +R V R TM +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI FDPLGLADDP Sbjct: 10 STTVVKATPFLGQT--KNANP-LRDVVAMGSARFTMSN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP 203
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 3.276e-61 Identity = 110/157 (70.06%), Postives = 129/157 (82.17%), Query Frame = 3 Query: 165 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 632 +YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+LMG +EGYR+ +FDPLGLADDPD Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPD 192
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 9.532e-61 Identity = 113/157 (71.97%), Postives = 125/157 (79.62%), Query Frame = 3 Query: 165 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 632 WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A A QVVLMG +EGYR+ +FDPLGLADDPD Sbjct: 39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPD 195
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 5.413e-56 Identity = 109/151 (72.19%), Postives = 119/151 (78.81%), Query Frame = 3 Query: 180 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 632 R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM ALGC+FPE+LS G FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW +V+LMG VEGYRI +FD LGLA+D + Sbjct: 58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTE 207
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 2.274e-54 Identity = 109/177 (61.58%), Postives = 132/177 (74.58%), Query Frame = 3 Query: 120 RITMRRTVKSTPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPD 632 R T ++ + + P++ +YGPDR K+LGPFSE TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+ GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A A QVVLMG E YR FDPLGLADDPD Sbjct: 16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPD 192
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.023e-46 Identity = 97/164 (59.15%), Postives = 117/164 (71.34%), Query Frame = 3 Query: 147 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 632 S+ + +YGPD Q P TGEFPGDYGWDTAGLSADPETF + RELE+IH+R +LGALG V PE+L+ ++G+KFG+ A+WFKAGA IF +GGL+YLGNP+LIHAQ+I+A A QVVLMG VEGYR+ AFDPLGLADDPD Sbjct: 51 SSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPD 213
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.434e-32 Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 3 Query: 366 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 632 E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+ AFDPLGLADDP+ Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPE 89
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.895e-27 Identity = 73/160 (45.62%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 165 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 632 WYGPDR +L + P YL GE GDYG+D GL PE FAK + E+IH+RWAMLGA G + PE L+K G G EAVWFK GA + L+Y G I +LA+ A +VVL+G E YRI FDPLGLA DP+ Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRI--TNGLDFEDKLHPGGPFDPLGLAKDPE 216 The following BLAST results are available for this feature:
BLAST of BQ622988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ622988 ID=BQ622988; Name=BQ622988; organism=Citrus sinensis; type=EST; length=632bpback to top |