BQ622989

Overview
NameBQ622989
Unique NameBQ622989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622989_ssr637 microsatellite BQ622989_ssr637:637..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:282..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.487e-62
Identity = 114/178 (64.04%), Postives = 131/178 (73.60%), Query Frame = 2
Query:    5 SCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 529
            SCG+C+ I C     +WC PGT I VTATNFC          GGWCNPP++HFD+SQP ++ IA YRAG+VPV YRRVPC R GGIRF +NGHSYF LVL+TNVGG+G V  + IKGS TGW  MSRNWG NWQSN  L+GQ+LSF V   DGR VT+ +VAPAGWSFG TY S AQF
Sbjct:   73 SCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATYTSSAQF 250          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.246e-61
Identity = 104/177 (58.76%), Postives = 133/177 (75.14%), Query Frame = 2
Query:    5 SCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 526
            SCG CY I C    D ++C+ GT + +TATN C          GGWCNPP+QHFD+++P +  I  Y  G+VPV Y+RVPC ++GG+RFTING  YF LVL++NVGG G + +VSIKGSRTGW  MSRNWG NWQSN YL+GQSLSF+VT+SDG+T+T  +VAPAGW+FG+T+S +Q
Sbjct:   82 SCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQ 258          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.065e-60
Identity = 107/173 (61.85%), Postives = 126/173 (72.83%), Query Frame = 2
Query:    8 CGSCYEIKC-VNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            CG+CY I C  +  KWC PG  +I +TATN C          GGWCNPP+QHFD+SQP +++IA Y+AG+VPV Y+RVPC R GGIRF I+GH YF LV +TNVGG+G V  +SIKGS TGW  MSRNWG NWQSN YL GQSLSF V   DGR VT++NVAP+ W FG TYS
Sbjct:   77 CGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATYS 249          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.949e-58
Identity = 99/178 (55.62%), Postives = 131/178 (73.60%), Query Frame = 2
Query:    5 SCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 529
            +CG CY+I C  ++ KWC  GT + +TATN C          GGWCNPP+QHFD++QP ++ I  YR G+VPV ++RV C R+GG+RFTING+SYF LVLITNVGG G + +V IKG++TGW  MSRNWG NWQ+N YLN Q++SF VT++ G+T+   +VAP+ W FG+T+ SG QF
Sbjct:   72 ACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFTSGVQF 249          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.103e-57
Identity = 97/172 (56.40%), Postives = 122/172 (70.93%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 520
            +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +KG++TGW  M +NWGQNW + T L GQ LSF VTTSDG T   +NV P  W FG+T+ G
Sbjct:  100 TCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDG 269          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.103e-57
Identity = 99/174 (56.90%), Postives = 125/174 (71.84%), Query Frame = 2
Query:    5 SCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            SCG CY I C +  D +WCL G ++++TATNFC          GGWCNPP +HFD++QP ++ I  YR G+VPV ++RV C ++GG+RF ING  YF LV I NVGGAG + +VSIKGS+TGW  MSRNWG NWQSN YL+GQ+LSF +TT+DG T    NV P+ WSFG+ YS
Sbjct:   74 SCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.881e-57
Identity = 97/172 (56.40%), Postives = 121/172 (70.35%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 520
            +CG+CY+I CV+DP+WCLPGTI +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF VTTSDG T    NV P  W FG+T+ G
Sbjct:  103 TCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.881e-57
Identity = 96/172 (55.81%), Postives = 121/172 (70.35%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 520
            +CG+CY+I CVNDP+WCLPG++ +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF VTTSDG T    NV P  W FG+T+ G
Sbjct:   96 TCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 265          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.208e-57
Identity = 101/172 (58.72%), Postives = 123/172 (71.51%), Query Frame = 2
Query:    8 CGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            CG+CY I C  +   WC PGT I +TATN C          GGWCNPP++HFD+SQP +  IA Y+AG+VPV ++RVPC + GGIRFTI+G  YF LV + NVGG+G V  VSIKGS+T W  MSRNWGQNWQSN YLN QSLSF+V   D R VT +N+AP+ W+FG TY+
Sbjct:   72 CGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTYT 243          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.147e-57
Identity = 95/172 (55.23%), Postives = 122/172 (70.93%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 520
            +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +K ++TGW  M +NWGQNW ++T L GQ LSF VTT+DG T   +NV P  W FG+T+ G
Sbjct:  106 TCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDG 275          
The following BLAST results are available for this feature:
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EXPA8_ORYSJ1.487e-6264.04Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ6.246e-6158.76Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ1.065e-6061.85Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ4.949e-5855.62Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH1.103e-5756.40Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP11_ARATH1.103e-5756.90Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP25_ARATH1.881e-5756.40Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH1.881e-5755.81Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP33_ORYSJ3.208e-5758.72Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH7.147e-5755.23Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622989 ID=BQ622989; Name=BQ622989; organism=Citrus sinensis; type=EST; length=671bp
TTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAAT
GGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCG
AACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCA
ACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAG
CTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGGA
GGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGAT
CACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGAT
CTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAA
AGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAG
CGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCT
TTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCAT
TAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGT
AGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATATATAT
ATAATATAGAAGTAGCTATGC
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