BQ622989

Overview
NameBQ622989
Unique NameBQ622989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622989_ssr637 microsatellite BQ622989_ssr637:637..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:282..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.592e-56
Identity = 101/176 (57.39%), Postives = 126/176 (71.59%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 529
            +CG CYE+KCV+D K+CLPGT I+VTATNFC          GG CNPP  HF L    F+ IA ++AGV+P+ YRRV C R GG+RF + G S+F  VLI+NVGGAGDV +V IKG+ +GW  M RNWGQ W  N+   GQ LSFE+T+SDG+T+T+YNV P  W FG+TY+G QF
Sbjct:   80 ACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQF 255          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.716e-56
Identity = 99/181 (54.70%), Postives = 125/181 (69.06%), Query Frame = 2
Query:    5 SCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQFR 532
            SCG CY+I C     P+WC PG T+ VTATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RNWG NW S +YL GQ LSF VT  DG+T+   N+ P+GW FG+T+ S  QF+
Sbjct:   98 SCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 278          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.632e-56
Identity = 98/175 (56.00%), Postives = 126/175 (72.00%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 529
            CG+C+E++CV+D +WC+PGT I++TATNFC          GG CNPP +HF L    F+ IA ++AG +PV YRR+ C + G +RFT++G   F  VLITNV G+GD+ AV IKGSRTGW PM RNWGQNW  N  L  Q+LSFEVT+SD  TVTSYNV+P  W++G+T+ G QF
Sbjct:   89 CGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.348e-55
Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = 2
Query:    5 SCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQFR 532
            SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RNWG NW S +YL GQ+LSF VT  DG+T+   N+ P+GW FG+T+ S  QF+
Sbjct:   82 SCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFTSKLQFK 262          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.299e-55
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = 2
Query:    5 SCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR--TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 526
            SCG CY + C    DP+WC  G ++ VTATNFC          GGWCNPP+ HFD++QP ++ I  YR G+VPVA+RRVPC RRGG+RFT+ G  YF LVL+TNV  AG V ++ ++GSR   GW  MSRNWG NWQS  YL+GQ LSF VT +DG+T+    V P  W FG+T++  Q
Sbjct:   82 SCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTFASTQ 260          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.299e-55
Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = 2
Query:    5 SCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQFR 532
            SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ + GS  T W PM RNWG NW S +YL GQ LSF VT  DG+T+   N+ P+GW FG+T+ S  QF+
Sbjct:  100 SCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 280          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.921e-55
Identity = 98/172 (56.98%), Postives = 119/172 (69.19%), Query Frame = 2
Query:    5 SCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            SCG+CY + C  +  +WC  GT + VTATN+C          GGWCNPP++HFD+SQP ++ IA Y +G+VPV Y R PC R GGIRF I GH Y+ LVL+TNV G+G V A  +KGS T W  MSRNWG+NWQSN YL GQ+LSF V   DG  VT+Y+VAPA W FG TY
Sbjct:   75 SCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGSTY 246          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.736e-55
Identity = 95/176 (53.98%), Postives = 123/176 (69.89%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 526
            CG+CYE+KCV+ P  C  G   ++VTATN C          GGWCNPP++HFDLS P F  IAQ +AG+VP++YRRVPC + GGIR+TI G+ YFNLV+++NVGGAGDV  +S+KG+ R  W P+ RNWGQ WQ++  L G+SL+F V T D R  TS++V P  W FG TY   +
Sbjct:   91 CGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTYQATK 266          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.490e-54
Identity = 97/174 (55.75%), Postives = 125/174 (71.84%), Query Frame = 2
Query:    5 SCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            SCG CY+I C     P+WCL G +I +TATNFC          GGWCNPP+ HFD++QP F  IA+Y+AG+VP+ Y++V C R GG+RFTING +YF LVLI+NV G G++  V IKGS++  W+ MSRNWG N+QSNTYLNGQSLSF+V  SDG    + NV P+ W FG+++
Sbjct:   76 SCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSF 249          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.946e-54
Identity = 95/181 (52.49%), Postives = 122/181 (67.40%), Query Frame = 2
Query:    5 SCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQFR 532
            SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YF LVL+TNV  AG + ++ + GS T  W PM+RNWG  W S  YL GQ LSF VT +D +T+   NV P GW FG+T+ S  QF+
Sbjct:   87 SCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASKLQFK 267          
The following BLAST results are available for this feature:
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EXP10_ORYSJ1.592e-5657.39Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ2.716e-5654.70Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH4.632e-5656.00Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP14_ORYSJ1.348e-5553.59Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ2.299e-5553.63Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ2.299e-5553.59Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ3.921e-5556.98Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP32_ORYSJ8.736e-5553.98Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.490e-5455.75Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP23_ORYSJ1.946e-5452.49Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622989 ID=BQ622989; Name=BQ622989; organism=Citrus sinensis; type=EST; length=671bp
TTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAAT
GGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCG
AACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCA
ACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAG
CTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGGA
GGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGAT
CACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGAT
CTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAA
AGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAG
CGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCT
TTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCAT
TAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGT
AGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATATATAT
ATAATATAGAAGTAGCTATGC
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