BQ622989

Overview
NameBQ622989
Unique NameBQ622989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622989_ssr637 microsatellite BQ622989_ssr637:637..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:282..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.555e-48
Identity = 93/177 (52.54%), Postives = 119/177 (67.23%), Query Frame = 2
Query:    5 SCGSCYEIKCVND--PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 526
            SCG CY I C  D  P  C  GT I VT TNFC          GGWCN  + HFD+SQP +++I  Y AG+VP+ Y++V C R GG+RFTI G +YF LVL+TN+ G+G + ++S+KGS TGW  MSRNWG NWQ    L GQ+LSF VT++ G+T+   +V PAGWSFG+T+S  Q
Sbjct:   71 SCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.920e-48
Identity = 95/182 (52.20%), Postives = 121/182 (66.48%), Query Frame = 2
Query:    5 SCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS--GAQF 529
            SCG CY+++C    DPKWCL G  + VTATNFC           GWCN P+ HFD+S P F  IA+    G+VPV YRRV C RRGG+RFT+ G   FN+V+I+NVGG G V +V+++GS+   W  M+RNWG NWQS+  L GQ LSF+VT +D +T T  NV P+ W FG+T+S  G QF
Sbjct:   75 SCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQF 251          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.034e-47
Identity = 88/174 (50.57%), Postives = 117/174 (67.24%), Query Frame = 2
Query:    5 SCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            SCG CY I C     P WC  G  I VT TN+C          GGWCN  + HFD+SQP +++I  Y AG++P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PAGWSFG+T+S
Sbjct:   71 SCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.010e-47
Identity = 87/173 (50.29%), Postives = 119/173 (68.79%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTY 514
            +CG C+++KCV+ P  C  G+   +VTATN C          GGWCNPP+ HFDL++P F  IA ++AG++PV+YRRV C + GGIRF   G+ Y+ LV + NVGG GD+  +++KGSRTGW  MS NWG ++Q+ + L GQSLSF +T+   R T+ +YN APA WS G+TY
Sbjct:   79 ACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 6.705e-47
Identity = 89/172 (51.74%), Postives = 112/172 (65.12%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 520
            SCG+CYEI C  +P+ CL G+I +TAT+ C            WC  P +HFDLS P+F  IAQ +A +VPV YRRVPC + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S  VTTSDG T    +V PA W FG+T+ G
Sbjct:   94 SCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.275e-45
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 2
Query:    5 SCGSCYEIKCV--NDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            SCG CY I C     P WC  G  I VT TN+           GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PAGWSFG+T+S
Sbjct:   71 SCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.972e-42
Identity = 85/175 (48.57%), Postives = 112/175 (64.00%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTY 514
            CG+CY+++CV     C  G+  I VTATN C          GG  WCNPP+ HFDLS+P F  +A +RAG+VPV YRRVPC R GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+   L GQ+LSF+VT+ + G+T+ +  V PA W FG TY
Sbjct:   86 CGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.390e-36
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFEVTT--SDGRTVTSYNVAPAGWSFGRTYSGA 523
            CG CYE++CV  P WC PG+  +++T TN C          GGWCNPP+ HFD++ P F  +AQ  AG+VPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S  G  W   + NWG  +Q    L N   L+ ++TT  +  +T+   +     W  G  Y G+
Sbjct:  103 CGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.004e-34
Identity = 73/170 (42.94%), Postives = 105/170 (61.76%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            CG+CYE+K  +        T++VTATN                    +HFDL+ P F  IA+ + GVVPV+YR+V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++   L G+SL+F V T D R  TS+ VAP  W++  TY
Sbjct:  130 CGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 63/189 (33.33%), Postives = 88/189 (46.56%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSI-----KGSRTGWQPMSRNWGQNWQSNTYLNGQS-----LSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            CGSCY++KC  +P  C    + V  T+ C          GG C     HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  G GD+ AV +      G    W  M ++WG  W+ N+   G +     +S  +T+  GRT+ + NV PAGW  G TY
Sbjct:   88 CGSCYQVKCSGNPS-CSGKPVTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTY 263          
The following BLAST results are available for this feature:
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EXP18_ORYSJ3.555e-4852.54Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH7.920e-4852.20Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP19_ORYSJ1.034e-4750.57Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH3.010e-4750.29Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP21_ARATH6.705e-4751.74Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ORYSJ6.275e-4549.43Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ4.972e-4248.57Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP17_ORYSJ2.390e-3642.46Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.004e-3442.94Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ1.192e-1933.33Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622989 ID=BQ622989; Name=BQ622989; organism=Citrus sinensis; type=EST; length=671bp
TTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAAT
GGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCG
AACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCA
ACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAG
CTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGGA
GGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGAT
CACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGAT
CTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAA
AGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAG
CGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCT
TTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCAT
TAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGT
AGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATATATAT
ATAATATAGAAGTAGCTATGC
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