BQ622989

Overview
NameBQ622989
Unique NameBQ622989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622989_ssr637 microsatellite BQ622989_ssr637:637..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:282..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 58/183 (31.69%), Postives = 87/183 (47.54%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-------RAGVVPVAYRRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYLN---GQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            CGSCY+IKC  + + C    + V  T+ C          GG C     HFD+S   F  +A          AGV+ + Y+RVPC     + F ++  S  Y+  +L+    G GD+ AV I  +R G  W+ M ++WG  W+ N+          S  +T+  G+ + + NV P+GW  G TY
Sbjct:   95 CGSCYQIKCTGN-RACSGRPVTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 64/187 (34.22%), Postives = 92/187 (49.20%), Query Frame = 2
Query:    2 LSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYRA-GVVPVAYRRVPCGRRGGIRFTI-----NGHSYFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            L CGSCY++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A      Q RA GV+ + Y RVPC   GG+  T      +  SYF  VL+    G GD+  + +   G+   W PM ++WG  W+ +     Q+ LS  +T+S G+T+ + NV P+GW  G +Y+
Sbjct:   85 LGCGSCYQVKCSGNSA-CSGNPVTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNW-GGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYT 259          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 61/185 (32.97%), Postives = 89/185 (48.11%), Query Frame = 2
Query:    2 LSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYRA-GVVPVAYRRVPCGRRGGIRFT----INGHSYFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            L CGSCY++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A      Q RA GV+ + Y RVPC   GG++ T    +  +  +  VL+    G GD+  V +   G+   W  M ++WG  W+ N     Q+  S  +T+S G+T+ + NV P+GW  G +Y
Sbjct:   85 LGCGSCYQVKCTGNSA-CSGNPVTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNW-GGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSY 258          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 61/183 (33.33%), Postives = 89/183 (48.63%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSL----SFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            CG+CYE+KC  +   C      V  T+ C          GG C     HFD+S      +A+         AG++ V YRRVPC   G  I F ++   + ++  VLI    G GD++AV +  +  GW PM +NWG  W+ N+   G++L    S  +T+  G+ + + NV PA W  G TY
Sbjct:  114 CGACYEVKCTTNAA-CSGQPATVVITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 59/194 (30.41%), Postives = 85/194 (43.81%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTI--NGHSYFNLVLITNVGGAGDVHAVSIKGSR--TG---------WQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            CGSCY+I+CV  P    LP T+++T  N+                    HFDLS   F  +A+         AG++ + +RRVPC   G  + F +    +  +  +L+    G GDV  V +  SR  TG         W PM  +WG  W+  +N  L G   S  +T   G+T+ +  V PA W     YS
Sbjct:  143 CGSCYQIRCVGHPACSGLPETVIITDMNYYPVSL--------------YHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWRLDTNHPLQG-PFSLRITNESGKTLIADQVIPADWQPNTVYS 321          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 58/195 (29.74%), Postives = 87/195 (44.62%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSRTG------WQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQFR 532
            CG+CY+I+C N+P     P T+++T  N+                  + HFDLS   F  +A+         AG++ + +RRVPC  RG  + F +   S   +  VL+      G V  + +  S         W PM R+WG  W+  +N  L G   S  + +  G+TV ++ V PA W     Y S  QFR
Sbjct:   82 CGACYQIRCTNNPSCSGQPRTVIITDMNYYPV--------------ARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWRLDANHRLQG-PFSLRMVSESGQTVIAHQVIPANWRANTNYGSKVQFR 261          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 55/179 (30.73%), Postives = 82/179 (45.81%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTINGHS---YFNLVLITNVGGAGDVHAVSI-KGSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWS 499
            CGSCY+I+CVN P     P T+++T  N+                  + HFDLS   F  +A+         AG++ + ++RVPC   G  + F +   S   YF  VL+    G GDV  V + + +   W PM  +WG  W+  SN  L     S  +T   G+ + +  V PA W+
Sbjct:   93 CGSCYQIRCVNHPACSGNPETVIITDMNYYPV--------------SKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSNPVYF-AVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSNHRLTA-PFSLRITNESGKQLVASQVIPANWA 255          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 57/183 (31.15%), Postives = 86/183 (46.99%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRG-GIRFTINGHS--YFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTYS 517
            CG+CY+++C+ D   C    + V  T+ C             C+    HFDLS  VF  +A           G++PV YRR  C  RG  I F +N  S  ++  +L+    G GD+ ++ I+  G+R  W  M   WG NW           S ++TT S G+T+++ +V P  W+   TYS
Sbjct:   86 CGACYKVRCL-DKSICSRRAVTVIITDECPG-----------CSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGARE-WLEMKHVWGANWCIIGGPLKGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYS 255          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 53/181 (29.28%), Postives = 78/181 (43.09%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPC---GRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG---WQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWS 499
            CGSCY ++C  +P  C     T+ +T  N+                  Q HFDLS   F  +A+        RAG++ V + RVPC   G + G          +  VL+    G GDV  V +K +  G   W PM  +WG  W+  SN  L     S  + +  G+T+ + +V P  W+
Sbjct:   99 CGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPL--------------SQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRA-PFSIRIRSDSGKTLVAPDVIPLNWT 263          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 56/190 (29.47%), Postives = 85/190 (44.74%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTINGHS---YFNLVLITNVGGAGDVHAVSIKGSRTG-------WQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            CGSCY+I+C  DP  C     T+++T  N+                  + HFDLS   F  +A+         +G++ + +RRVPC   G  I F +   S   YF  VL+      GDV  V +  S++        W PM  +WG  W+ ++    Q+  S  + +  G+T+ + NV PA WS    Y
Sbjct:   95 CGSCYQIRCNKDPS-CSGNIETVIITDMNYYPV--------------ARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYF-AVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWRLDSNHRLQAPFSLRIRSDSGKTLVANNVIPANWSPNSNY 268          
The following BLAST results are available for this feature:
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EXPB5_ORYSJ4.529e-1931.69Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB18_ORYSJ2.935e-1834.22Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ6.539e-1832.97Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ8.541e-1833.33Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ9.772e-1430.41Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ORYSJ9.772e-1429.74Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ORYSJ6.334e-1330.73Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ARATH6.334e-1331.15Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXPB8_ORYSJ4.105e-1229.28Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB6_ORYSJ5.362e-1229.47Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622989 ID=BQ622989; Name=BQ622989; organism=Citrus sinensis; type=EST; length=671bp
TTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAAT
GGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCG
AACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCA
ACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAG
CTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGGA
GGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGAT
CACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGAT
CTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAA
AGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAG
CGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCT
TTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCAT
TAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGT
AGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATATATAT
ATAATATAGAAGTAGCTATGC
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