BQ622989

Overview
NameBQ622989
Unique NameBQ622989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622989_ssr637 microsatellite BQ622989_ssr637:637..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:282..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 50/182 (27.47%), Postives = 77/182 (42.31%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPC---GRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-------WQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGW 496
            CGSCY+I+C  D        T+++T  N+                    HFDLS   F  +A+         +G++ + + RVPC   G + G       +  +  VL+    G GDV  V +  S+T        W PM  +WG  W+ +T    Q+  S  +    G+T+ + NV PA W
Sbjct:  106 CGSCYKIRCTKDQSCSGRSETVIITDMNYYPVAPF--------------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLDTNHRLQAPFSIRIRNESGKTLVANNVIPANW 273          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 55/185 (29.73%), Postives = 85/185 (45.95%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTI-----NGHSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPMSRNWGQNWQSNT--YLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            CGSC+E+KC + P+ C    +++  T+                     HFDLS   F  +A+        +AG++ + +RRV C   G  + T      +  +YF  VL+  VGG GDV  V +  KGS   W+P++ +WG  W+ +T   L G   S  VTT   + + + +V P  W     Y
Sbjct:   92 CGSCFEVKC-SKPEACSDKPVIIHITDMNTEPI------------AAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYF-AVLVKYVGGDGDVVKVELKEKGSEE-WKPLNESWGAIWRIDTPKPLKG-PFSLRVTTESDQKLVANDVIPDNWKANALY 260          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 57/186 (30.65%), Postives = 83/186 (44.62%), Query Frame = 2
Query:    8 CGSCYEIKCV-NDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYRRVPCGRRG-GIRFTINGHSYFNLV--LITNVGGAGDVHAVSIK----GSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 514
            CGSCY + C  N+    +P T+++T                G C     HFD+S   F  +A      Q R AG++ + Y RV C   G G+ F ++  S  N +  L+       D+ AV I     G+   W PM ++WG  W+  S + L G   S  +T S G+   + N  PAGW+ G  Y
Sbjct:   89 CGSCYRVVCAGNEACSGIPVTVVITDQG--PGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQG-PFSVRLTFSSGQMFVASNAIPAGWNPGMAY 271          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWC--LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRGGIRFTIN----GHSYFNLVLITNVGGAGDVHAVSI-KGSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 529
            CGSCYE+KC   P  C   P T+ +T  N+                    HFD S   F  +A         +AG++ + +RRV C   GG + T +     +  +  VL+  V   GDV  + + +     W+PM  +WG  W+ +T    ++  S  VTT  G+++ + +V P  W     Y S  QF
Sbjct:   94 CGSCYEVKC-EQPAACSKQPVTVFITDMNYEPI--------------SAYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKAPFSIRVTTESGKSLIAKDVIPVNWMPDAIYVSNVQF 268          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 54/183 (29.51%), Postives = 84/183 (45.90%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYRRVPCGRRGG-IRFTINGHSYFN--LVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSD-GRTVTSYNVAPAGWSFGRTY 514
            CG+CY++KC +    C    + V  T+ C             C     HFDLS   F  +A      Q R  G + + Y++V C   G  + F ++  S  N   VL+  V G G++  + +K +     W  MS++WG  W+ +     ++ LS  VT+ + G+TV + NV PA W  G  Y
Sbjct:   97 CGACYQVKCTSKSA-CSKNPVTVVITDECPG-----------CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIY 267          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 54/182 (29.67%), Postives = 80/182 (43.96%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRG-GIRFTIN-GHSYFNLVLITNV-GGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTYS 517
            CG+CY+++C+ D   C    + V  T+ C          GG C   + HFDLS   F  +A           G + V YRR  C   G  I F +N G + F L L+     G GD+ ++ +K + +  WQ M   WG  W           S  +TT   R T+++ +V P  W+   TY+
Sbjct:   95 CGACYKVRCL-DASICSRRAVTVIVTDEC---------PGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFSVRLTTLTTRQTLSAQDVIPKNWTPKATYT 266          
The following BLAST results are available for this feature:
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EXPB4_ORYSJ5.362e-1227.47Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_ORYSJ2.038e-1129.73Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB12_ORYSJ2.661e-1130.65Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB9_ORYSJ3.475e-1128.42Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ARATH4.539e-1129.51Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXB16_ORYSJ4.539e-1129.67Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622989 ID=BQ622989; Name=BQ622989; organism=Citrus sinensis; type=EST; length=671bp
TTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAAT
GGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCG
AACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCA
ACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAG
CTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGGA
GGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGAT
CACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGAT
CTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAA
AGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAG
CGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCT
TTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCAT
TAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGT
AGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATATATAT
ATAATATAGAAGTAGCTATGC
back to top