BQ622991

Overview
NameBQ622991
Unique NameBQ622991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:644..1210. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622991 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:    9 TGVGLAA-EIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 320
            TG G +  E +  FVLVYTVF+A+DP+R      +P+ + P+ IGF      LA  P +G  +NPA + G+A++Y   K   +Q ++WVGP +G A AA  +  ++
Sbjct:  142 TGFGASVLEGVLAFVLVYTVFTASDPRRG-----LPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFK---NQAVYWVGPLLGGATAALVYDNVV 239
The following BLAST results are available for this feature:
BLAST of BQ622991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
TIP51_ARATH9.361e-1138.68Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00082 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00082 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622991 ID=BQ622991; Name=BQ622991; organism=Citrus sinensis; type=EST; length=564bp
GGTACAGCACCGGCGTTGGATTGGCCGCCGAGATCATCGGCACCTTTGTC
TTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAGAGAAGCGCCAGAGA
CTCCCACGTTCCCGTTTTGGCACCGCTCCCCATTGGATTTGCTGTGTTCA
TGGTACACTTGGCCACAATCCCAATCACTGGCACTGGCATTAACCCAGCA
AGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGA
TCAATGGCTCTTCTGGGTTGGACCCTTCATTGGTGCAGCAATTGCAGCTT
TCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCA
TTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCTTCGACAAGTGGATTA
TCCACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGG
AAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGGGGGGT
GATTTGTGCTTTTAAGGAGTTGAGGCAAAAAGTCTCTTAGACAATGAGGG
GGTTTTTTGTAAAT
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