BQ623002

Overview
NameBQ623002
Unique NameBQ623002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7157 contig Csv1_Contig7157:601..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.659e-16
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K+
Sbjct:  140 TDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.840e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.840e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.840e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180          
The following BLAST results are available for this feature:
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ARF_MAIZE2.659e-1688.10ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_RAT3.840e-1582.93ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE3.840e-1582.93ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN3.840e-1582.93ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF3_TAKRU1.117e-1480.49ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT1.117e-1480.49ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB1.117e-1480.49ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.117e-1480.49ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.117e-1480.49ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.117e-1480.49ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00093 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623002 ID=BQ623002; Name=BQ623002; organism=Citrus sinensis; type=EST; length=360bp
ACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGTATATCCA
GAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGACTGGC
TCTCAAACAACATTGCAAACAAGGCATAGACAACTAAATTTTGAGTTTTG
GGTTGCCGCAACTGCTGAAATACAGAGTTAACAACACATCTCAAGTGTTC
TTGCTTTCCTTCCTGTAATAGCTTCGTTGCCCGTTTTACTGTGTTTGTTG
TTTCCCTTGCAAACGTTGAGATTTGTTTCTTGTAGCTTCAGAATAATTCT
TGAATGTTTATCTTTCCTCATGGTGTCCTCTCGATAGCCTCCTTTTTCCT
GATAAAAAAA
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