BQ623002

Overview
NameBQ623002
Unique NameBQ623002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  140 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N++
Sbjct:  140 TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N++
Sbjct:  140 TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            T+KLGLHS+RQR WYIQ+TCATSGEGLYEGL+WLS N+ N+A
Sbjct:  140 TEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLKNQA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 120
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N
Sbjct:  140 TDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179          
The following BLAST results are available for this feature:
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ARF1_XENLA1.459e-1480.49ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT1.459e-1480.49ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.459e-1480.49ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.459e-1480.49ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.459e-1480.49ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN1.459e-1480.49ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF12_CAEEL1.459e-1478.57ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR1.459e-1478.57ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF_ASHGO1.906e-1478.57ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF1_LOCMI1.906e-1482.50ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00093 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623002 ID=BQ623002; Name=BQ623002; organism=Citrus sinensis; type=EST; length=360bp
ACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGTATATCCA
GAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGACTGGC
TCTCAAACAACATTGCAAACAAGGCATAGACAACTAAATTTTGAGTTTTG
GGTTGCCGCAACTGCTGAAATACAGAGTTAACAACACATCTCAAGTGTTC
TTGCTTTCCTTCCTGTAATAGCTTCGTTGCCCGTTTTACTGTGTTTGTTG
TTTCCCTTGCAAACGTTGAGATTTGTTTCTTGTAGCTTCAGAATAATTCT
TGAATGTTTATCTTTCCTCATGGTGTCCTCTCGATAGCCTCCTTTTTCCT
GATAAAAAAA
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