BQ623002

Overview
NameBQ623002
Unique NameBQ623002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7157 contig Csv1_Contig7157:601..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 120
            TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N
Sbjct:  140 TDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            T+KLGLHS+R R W+IQSTCATSGEGLYEGL+WLSNN+ N++
Sbjct:  140 TEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLR R WYIQ+TCATSG+GLYEGL+WLS N+ N+
Sbjct:  140 TDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS  + N++
Sbjct:  140 TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLRQR WYIQ+ CATSG+GLYEGL+WLS N+  K+
Sbjct:  140 TDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKL LHSLR R WYIQSTCATSG+GLYEGLDWLSN + + +
Sbjct:  140 TDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 120
            T+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++ N
Sbjct:  140 TEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.042e-12
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGL SLRQR WYIQ+TCAT+G+GL+EGLDWLS  +  K+
Sbjct:  143 TDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKKKS 184          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  140 TDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  140 TDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
The following BLAST results are available for this feature:
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ARF1_DROME1.906e-1482.50ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF2_YEAST4.245e-1476.19ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF1_SCHPO5.545e-1478.05ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF_DUGJA7.241e-1476.19ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF_CRYNE1.613e-1376.19ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF1_DICDI1.613e-1376.19ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF1_YEAST6.130e-1375.00ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF_NEUCR3.042e-1271.43ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF4_RAT5.190e-1270.73ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_PONAB5.190e-1270.73ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00093 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623002 ID=BQ623002; Name=BQ623002; organism=Citrus sinensis; type=EST; length=360bp
ACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGTATATCCA
GAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGACTGGC
TCTCAAACAACATTGCAAACAAGGCATAGACAACTAAATTTTGAGTTTTG
GGTTGCCGCAACTGCTGAAATACAGAGTTAACAACACATCTCAAGTGTTC
TTGCTTTCCTTCCTGTAATAGCTTCGTTGCCCGTTTTACTGTGTTTGTTG
TTTCCCTTGCAAACGTTGAGATTTGTTTCTTGTAGCTTCAGAATAATTCT
TGAATGTTTATCTTTCCTCATGGTGTCCTCTCGATAGCCTCCTTTTTCCT
GATAAAAAAA
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