BQ623002

Overview
NameBQ623002
Unique NameBQ623002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  140 TDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  140 TDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  140 TDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.852e-12
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKL L+ LR RHW+IQSTCAT G GLYEGLDWLS  +A K
Sbjct:  140 TDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAELAKK 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 25/38 (65.79%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 114
            T+K+GLHS+  R W+IQ+TCAT+G+GLYEGL+WLSN +
Sbjct:  140 TEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSNQV 177          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGL +LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:  140 TDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKL L +LR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  140 TDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
The following BLAST results are available for this feature:
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ARF4_MOUSE5.190e-1270.73ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF4_HUMAN5.190e-1270.73ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF4_BOVIN5.190e-1270.73ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF2_DROME8.852e-1273.17ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF_CANAL9.787e-1165.79ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF5_CHICK9.787e-1163.41ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF4_XENLA9.787e-1165.85ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00093 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623002 ID=BQ623002; Name=BQ623002; organism=Citrus sinensis; type=EST; length=360bp
ACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGTATATCCA
GAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGACTGGC
TCTCAAACAACATTGCAAACAAGGCATAGACAACTAAATTTTGAGTTTTG
GGTTGCCGCAACTGCTGAAATACAGAGTTAACAACACATCTCAAGTGTTC
TTGCTTTCCTTCCTGTAATAGCTTCGTTGCCCGTTTTACTGTGTTTGTTG
TTTCCCTTGCAAACGTTGAGATTTGTTTCTTGTAGCTTCAGAATAATTCT
TGAATGTTTATCTTTCCTCATGGTGTCCTCTCGATAGCCTCCTTTTTCCT
GATAAAAAAA
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