BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.493e-64
Identity = 120/212 (56.60%), Postives = 163/212 (76.89%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+DKVG DGV+                GM+IDRGYISP FVT+ E+++ E ENAR+L+ ++KIS+++D++ +LE+  +   PLLIIAED+ GEALATLVVNKLRG+LNV AIKAPGFGERR+A+LQDIA++TG +  + D+GL ++   +E LGTARKVTI KD+TTI+++AA+  ++  R+ QL+++L ETDS YD EKL ERIAKL+GGV
Sbjct:  163 AMDKVGKDGVITVEESKSLATEMEIVEGMQIDRGYISPYFVTDAERMVAEIENARLLIVNKKISSLQDLVGILEQVARAGQPLLIIAEDLEGEALATLVVNKLRGVLNVVAIKAPGFGERRQAMLQDIAVLTGGQVISEDVGLTLDKVDLEMLGTARKVTISKDNTTIVSEAANAGDVGKRVEQLRRQLDETDSEYDKEKLQERIAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.790e-62
Identity = 119/213 (55.87%), Postives = 161/213 (75.59%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+++V  DGV+                GM IDRGYISP F+TN E+  VE ENAR+L+TD+KI++I++++P+L+K  +L  PLLI+AEDV G+ALATLVVNK RG+L+VAAIKAPGFGERRKALLQDIAI+T  +  + ++GL ++  S++ L TAR +TI K++TTI+A   +K EIQ RI Q++K+L ETDS YD EKL ERIAKL+GG+
Sbjct:  162 EAVERVTKDGVITVEESKSLTTELDVVEGMHIDRGYISPYFITNNERQTVELENARILITDKKINSIQELVPVLKKVARLGQPLLIVAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASIDALCTARTITIDKENTTIVAGTTTKPEIQKRIGQIRKQLEETDSEYDKEKLQERIAKLAGGI 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HELPJ (60 kDa chaperonin OS=Helicobacter pylori J99 GN=groL PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 8.885e-62
Identity = 118/213 (55.40%), Postives = 157/213 (73.71%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  + +NA +L+TD+KIS++KDI+PLLEKT +   PLLIIAED+ GEAL TLVVNKLRG+LN+AA+KAPGFG+RRK +L+DIAI+TG +  + +LGL +EN  VE LG A ++ I KD+TTI+      D+++ R+AQ+K ++A T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HELPH (60 kDa chaperonin OS=Helicobacter pylori (strain HPAG1) GN=groL PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 8.885e-62
Identity = 118/213 (55.40%), Postives = 157/213 (73.71%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  + +NA +L+TD+KIS++KDI+PLLEKT +   PLLIIAED+ GEAL TLVVNKLRG+LN+AA+KAPGFG+RRK +L+DIAI+TG +  + +LGL +EN  VE LG A ++ I KD+TTI+      D+++ R+AQ+K ++A T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HELPG (60 kDa chaperonin OS=Helicobacter pylori (strain G27) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.160e-61
Identity = 117/213 (54.93%), Postives = 157/213 (73.71%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  + +NA +L+TD+KIS++KDI+PLLEKT +   PLLIIAED+ GEAL TLVVNKLRG+LN+AA+KAPGFG+RRK +L+DIA++TG +  + +LGL +EN  VE LG A ++ I KD+TTI+      D+++ R+AQ+K ++A T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAVLTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HELP2 (60 kDa chaperonin OS=Helicobacter pylori (strain P12) GN=groL PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.585e-61
Identity = 117/213 (54.93%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  + +NA +L+TD+KIS++KDI+PLLEKT +   PLLIIAED+ GEAL TLVVNKLRG+LN+AA+KAPGFG+RRK +L+DIAI+TG +  + +LGL +EN  VE LG A ++ I KD+TTI+      D+++ R+ Q+K ++A T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVVQIKTQIASTTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_MOOTA (60 kDa chaperonin 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL1 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.585e-61
Identity = 118/213 (55.40%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GME DRGY+SP FVTN E +  EFE   +L+ ++KISAI D++PLLEK  +   PL+IIAED+ GEALATLVVNKLRG LN AA+KAPGFG+RRKA+++DIAI+TG  F + DLG+ +EN  +  LG A+KV I K+ TTI+     K+ +  RIAQ+KK++ ETDS YD EKL ER+AKL+GGV
Sbjct:  163 DAMEKVGKDGVITVEESKGTATTVEVVEGMEFDRGYVSPYFVTNTEAMEAEFEEPYILIHEKKISAINDLLPLLEKVVRTGKPLVIIAEDIEGEALATLVVNKLRGTLNCAAVKAPGFGDRRKAMMEDIAILTGGTFLSEDLGVKLENVDLNMLGRAKKVKIAKEKTTIVEGYGKKEAVDGRIAQIKKQIEETDSDYDREKLQERLAKLAGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.376e-61
Identity = 111/212 (52.36%), Postives = 157/212 (74.06%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+D VG DGV+                GM+ DRGYISP FVT+ E+++ E+ENA +L+T  K+S ++D++P+LE+  +   PLL+IAEDV GEALATLVVNKLRG+LN  A+KAP FG+RRKA+L+DIAI+TG +  + D+G+ +EN +++ +G ARK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGV
Sbjct:  164 AMDAVGRDGVITVEESKSLETQLEVVEGMQFDRGYISPYFVTDTERMVAEYENAYLLITSNKLSNLQDLVPVLERVAREGRPLLVIAEDVEGEALATLVVNKLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQLISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.410e-61
Identity = 118/213 (55.40%), Postives = 158/213 (74.18%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG DGV+                GM+ DRGYISP FVT+PE++IV+  NA +L+TD+KI++I+D+IP LE+  +   PL+IIAEDV GEALATLVVNKLRG+LNV A+KAP FGERRKA+LQDIAI+TG +  + ++GL +E+  +  LG A  VT+ KD+T ++++  +K +IQ R+ QLK++LAETDS YD EKL ERIAKL GGV
Sbjct:  162 EAMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYFVTDPERMIVQLNNAYLLLTDKKITSIQDLIPTLERVARSGRPLVIIAEDVEGEALATLVVNKLRGVLNVVAVKAPAFGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.410e-61
Identity = 118/213 (55.40%), Postives = 158/213 (74.18%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG DGV+                GM+ DRGYISP FVT+PE++IV+  NA +L+TD+KI++I+D+IP LE+  +   PL+IIAEDV GEALATLVVNKLRG+LNV A+KAP FGERRKA+LQDIAI+TG +  + ++GL +E+  +  LG A  VT+ KD+T ++++  +K +IQ R+ QLK++LAETDS YD EKL ERIAKL GGV
Sbjct:  162 EAMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYFVTDPERMIVQLNNAYLLLTDKKITSIQDLIPTLERVARSGRPLVIIAEDVEGEALATLVVNKLRGVLNVVAVKAPAFGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGV 374          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_ACAM19.493e-6456.6060 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_ANASL1.790e-6255.8760 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH60_HELPJ8.885e-6255.4060 kDa chaperonin OS=Helicobacter pylori J99 GN=gr... [more]
CH60_HELPH8.885e-6255.4060 kDa chaperonin OS=Helicobacter pylori (strain H... [more]
CH60_HELPG1.160e-6154.9360 kDa chaperonin OS=Helicobacter pylori (strain G... [more]
CH60_HELP22.585e-6154.9360 kDa chaperonin OS=Helicobacter pylori (strain P... [more]
CH601_MOOTA2.585e-6155.4060 kDa chaperonin 1 OS=Moorella thermoacetica (str... [more]
CH601_SYNJA3.376e-6152.3660 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH602_THEVL4.410e-6155.4060 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB4.410e-6155.4060 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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