BQ623023

Overview
NameBQ623023
Unique NameBQ623023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:355..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623023 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 1
Query:    4 LKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 477
            LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A T                K  E+ + RLAM+A L F  +    GK P
Sbjct:   89 LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPT-------------QEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 230          
BLAST of BQ623023 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 61/178 (34.27%), Postives = 78/178 (43.82%), Query Frame = 1
Query:   16 REAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 480
            R  E+IHGRWAM   +G     V Q W G+      WF+AG+            +P  +   S  ++LG Q+LLMG VE  R                       N  +  GE    YPGG++FDPL LA          D      LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   96 RALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR----------------------INGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242          
The following BLAST results are available for this feature:
BLAST of BQ623023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CB24_ARATH2.171e-1131.52Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_HORVU3.703e-1134.27Chlorophyll a-b binding protein of LHCII type III,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00114 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00114 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623023 ID=BQ623023; Name=BQ623023; organism=Citrus sinensis; type=EST; length=602bp
TTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAAT
GGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCAT
GGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGC
TCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCG
GTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACAC
CTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGC
TACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAATTAA
GGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAGTTG
CTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTCTAC
TTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTTGGTTTGTAAAA
ACATGCTTATGTAGATAACTCACTGATTGGTGTTAAAGCGTAATCAATCG
GATGTATATGAGTTCCCTCAATGAGAGTTCAATTTGATGGGGTTAGTTTG
GG
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