BQ623041

Overview
NameBQ623041
Unique NameBQ623041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:949..1487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 9.443e-63
Identity = 115/151 (76.16%), Postives = 130/151 (86.09%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 453
            DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  282 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.686e-62
Identity = 113/148 (76.35%), Postives = 127/148 (85.81%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSG 444
            DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +G
Sbjct:  285 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 3.568e-61
Identity = 110/152 (72.37%), Postives = 122/152 (80.26%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 456
            DFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+G
Sbjct:  284 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 25.409 bits (54), Expect = 3.568e-61
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  494 GKAAQQMNGPVPEGC 538
            GKAAQQ++ PV +GC
Sbjct:  435 GKAAQQVSLPVAQGC 449          
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.508e-60
Identity = 113/151 (74.83%), Postives = 126/151 (83.44%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 453
            DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  290 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.366e-52
Identity = 98/127 (77.17%), Postives = 107/127 (84.25%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 381
            DFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  283 DFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.189e-42
Identity = 86/137 (62.77%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 411
            DFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR W            LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  259 DFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.165e-34
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 393
            DFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R++            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  159 DFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.134e-34
Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 393
            DFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R++            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y
Sbjct:  159 DFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289          
The following BLAST results are available for this feature:
BLAST of BQ623041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA_MAIZE9.443e-6376.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN4.686e-6276.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.568e-6172.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.508e-6074.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA3.366e-5277.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE9.189e-4262.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.165e-3451.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC4.134e-3449.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00132 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00132 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623041 ID=BQ623041; Name=BQ623041; organism=Citrus sinensis; type=EST; length=539bp
GACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAA
ATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTA
TCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTTGAC
ACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGT
CTATGATGATGAGGTGAGGAATTGGATCTCTGGTATTGGTGTTGGAAGCA
TTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAA
CCAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCA
AGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTG
AGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTTC
TATGGGTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGCAAAG
CAGCCCAGCAAATGAATGGTCCAGTTCCTGAAGGATGTA
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