BQ623067

Overview
NameBQ623067
Unique NameBQ623067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.134e-19
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ EM++GG D+ FE IG    M  A +  +E +G +VI+GV      +S+N + +L GR+  G  FGG K K  +  L   ++ K+  LD  ITH + F  IN+ FDLL  GKS+R ++
Sbjct:  248 KPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGKSIRTIL 372          

HSP 2 Score: 22.3274 bits (46), Expect = 1.134e-19
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 IIGVDINPEKF 35
            IIGVDIN +KF
Sbjct:  219 IIGVDINKDKF 229          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.262e-19
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+KEMTDGG D+ FE IG    M  +     E  G +VI+GV      +S+N + +L GR+  G  +GG K +  I  L   ++ K+ +LD  ITH + F  IN+ FDLL  GKS+R V+
Sbjct:  249 KPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSREGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.648e-19
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+KEMTDGG D+ FE IG    M  +     E  G +VI+GV      +S+N + +L GR+  G  FGG K K  +  L   ++ K+ +LD  IT+ + F  IN+ FDLL  GKS+R V+
Sbjct:  249 KPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.152e-19
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+KEMTDGG D+ FE IG    +  +     E  G +VI+GV      +S+N + +L GR+  G  FGG K K  +  L   ++ K+ +LD  IT+ + F  IN+ FDLL  GKS+R ++
Sbjct:  249 KPIQEVLKEMTDGGVDFSFEVIGRLDTIMASLLCCHEACGTSVIVGVPPDSQNLSINPVLLLTGRTWKGAIFGGFKSKESVPKLVSDFMAKKFSLDALITNVLPFEKINEGFDLLRSGKSIRTIL 373          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.495e-19
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ EM++GG D+ FE IG    M  A +  +E +G +VI+GV      +S+N + +L GR+  G  FGG K K  +  L   ++ K+  LD  ITH + F  IN+ FDLL  G+S+R ++
Sbjct:  249 KPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTIL 373          

HSP 2 Score: 22.3274 bits (46), Expect = 2.495e-19
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 IIGVDINPEKF 35
            IIGVDIN +KF
Sbjct:  220 IIGVDINKDKF 230          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 44/125 (35.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ VI E+T GG D+  +C G A  +  A + +  GWG   ++G ++    +++++++++ GRSV GTFFGG K    +  L   Y +K+ +LD  +TH + F  IN A DL+ +GKS+R ++
Sbjct:  253 KPVQDVITELTGGGVDFSLDCAGTAQTLKAAVDCTVVGWGSCTVVGAKV--DEMNISTVDMILGRSVKGTFFGGWKSVDSVPNLVTDYKNKKFDLDLLVTHALPFDKINDAIDLMNQGKSIRTIL 375          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.244e-19
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   43 VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            V+   TDGG D+ F+C G   VM  A  +  +GWG+++++GV   G  IS    +++ GR   G  FGG+K +S +  L ++YLD +L +D++ITH     +IN+AF  +  G  ++ V+
Sbjct:  258 VLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTVL 377          

HSP 2 Score: 21.9422 bits (45), Expect = 3.244e-19
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:    3 IIGVDINPEK 32
            I G+D+NPEK
Sbjct:  224 IFGIDVNPEK 233          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.671e-19
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+KEMTDGG D+ FE IG    M  +     E  G +VI+GV      +S+N + +L GR+  G   GG K K  +  L   ++ K+ +LD  ITH + F  IN+ FDLL  GKS+R ++
Sbjct:  249 KPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.487e-19
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ +MTD G D+CFE IG   V+  A  S  E +G  V++G+      + ++      GRS+ G+ FGG K +  I  L   Y+ K+LNLD  ITH ++   IN+A +L+  GK +RC++
Sbjct:  249 KPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGLLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAKKLNLDPLITHTLNLDKINEAVELMKTGKCIRCIL 373          

HSP 2 Score: 23.483 bits (49), Expect = 5.487e-19
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:    3 IIGVDINPEKFE 38
            IIGVD+N EKF+
Sbjct:  220 IIGVDVNKEKFK 231          
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 8.179e-19
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+KEMTDGG D+ FE IG    M  +     E  G +VI+GV      +S+N + +L GR+  G   GG K K  +  L   ++ K+ +LD  ITH + F  IN  FDLL  GKS+R ++
Sbjct:  249 KPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAVLGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINDGFDLLHSGKSIRTIL 373          
The following BLAST results are available for this feature:
BLAST of BQ623067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1S_HORSE1.134e-1938.40Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1B_PAPHA1.262e-1940.00Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH1G_HUMAN1.648e-1940.00Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1G_PAPHA2.152e-1938.40Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH1E_HORSE2.495e-1937.60Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH4_RAT2.811e-1935.20Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
FADH2_SCHPO3.244e-1935.83Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH1A_HUMAN3.671e-1939.20Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH6_PONAB5.487e-1936.80Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1A_PONAB8.179e-1939.20Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00158 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00158 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623067 ID=BQ623067; Name=BQ623067; organism=Citrus sinensis; type=EST; length=476bp
AGATTATAGGTGTTGATATAAATCCTGAAAAATTTGAGATAGGTGATAAA
GGAAATGACAGATGGGGGAGCAGACTATTGCTTCGAGTGCATTGGCTTGG
CGTCCGTAATGAATGATGCTTTCAACAGTAGCCGAGAGGGCTGGGGCAAG
ACGGTGATACTAGGAGTGGAGATGCATGGCTCCCCAATTTCTTTGAATTC
CATCGAGATTCTCAAAGGCAGAAGCGTTTGTGGCACATTTTTCGGAGGGC
TGAAACCCAAATCTGACATTGCTACTCTCGCCCAGAAGTACCTAGACAAG
GAGCTTAATCTGGACGAGTTCATAACACACGAAGTGAGCTTCCACGATAT
TAACAAAGCTTTCGACTTGCTCCTCGAAGGAAAAAGTCTGCGTTGCGTCA
TCTGGATGGATAAATTGATATAGGACAGCAAGTATTCTTCTTATATGGTA
CACTTTATTGAAATAATCAAGTTTGG
back to top