BQ623072

Overview
NameBQ623072
Unique NameBQ623072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.140e-29
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:  115 FKCHRDGS-------EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKTYIYL 393
            FKCHR          +IY+VN + FHP+H T AT GSDG F+FWDKD++ +LK   +  QP+    FN++G+IFAY+  YDWSKG E +NP   K YI+L
Sbjct:  257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPVAACGFNHNGNIFAYASSYDWSKGHEFYNP-QKKNYIFL 355          

HSP 2 Score: 40.4318 bits (93), Expect = 5.140e-29
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 2
Query:    5 RCVAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQSK-NF----HFSNAT 127
            RCVA F D+Q    GF +GSIEGRV +H+++    +K NF    H SN T
Sbjct:  216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: NPP17_CAEEL (Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.837e-21
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1
Query:  115 FKCHRDGS------EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKTYIY 390
            FKCHR         EIY+VN + FHP H T  T GSDG ++ WDKD++ +LK       P+ C   ++ G+   Y++ YDWS+G E +    +K  I+
Sbjct:  263 FKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHPMPLTCCDVHSSGAFLVYALGYDWSRGHEGNTQPGSKIVIH 360          

HSP 2 Score: 36.965 bits (84), Expect = 6.837e-21
Identity = 18/42 (42.86%), Postives = 25/42 (59.52%), Query Frame = 2
Query:    5 RCVAAFPDQQ-----GFLVGSIEGRVGVHHLDDSQQSKNFHF 115
            RC++ F D+      GF +GSIEGRV V ++D +    NF F
Sbjct:  222 RCISIFKDKSNQNPAGFALGSIEGRVAVQYVDVANPKDNFTF 263          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: GLE2_YEAST (Nucleoporin GLE2 OS=Saccharomyces cerevisiae GN=GLE2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 50/117 (42.74%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  115 FKCHRDG-----------SEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPR 432
            FKCHR             S +Y VNS+ FHP++ TF TAG DG FNFWDK+ + RLK        IP  +FN +GS+FAY++ YDW +G   + P      I LH   + EVK K +
Sbjct:  249 FKCHRQTNPNRAPGSNGQSLVYPVNSIAFHPLYGTFVTAGGDGTFNFWDKNQRHRLKGYPTLQASIPVCSFNRNGSVFAYALSYDWHQGHMGNRP-DYPNVIRLHATTDEEVKEKKK 364          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: BUB3_HUMAN (Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.536e-19
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  115 FKCHR----DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA 435
            FKCHR    +  +IY VN+++FH IH+TFAT GSDG  N WD  +K+RL    R    I    F+NDG+  A +  Y +      H P        + + Q T+ + KP++
Sbjct:  221 FKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG-----IFIRQVTDAETKPKS 325          

HSP 2 Score: 45.4394 bits (106), Expect = 3.536e-19
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:    2 TRCVAAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFHF 115
            TRC+ AFP++QG+++ SIEGRV V +LD S   Q K + F
Sbjct:  182 TRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAF 221          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: BUB3_MOUSE (Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.537e-19
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  115 FKCHR----DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA 435
            FKCHR    +  +IY VN+++FH IH+TFAT GSDG  N WD  +K+RL    R    I    F+NDG+  A +  Y +      H P        + + Q T+ + KP++
Sbjct:  221 FKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG-----IFIRQVTDAETKPKS 325          

HSP 2 Score: 45.4394 bits (106), Expect = 3.537e-19
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:    2 TRCVAAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFHF 115
            TRC+ AFP++QG+++ SIEGRV V +LD S   Q K + F
Sbjct:  182 TRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAF 221          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: BUB3_BOVIN (Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.537e-19
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  115 FKCHR----DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA 435
            FKCHR    +  +IY VN+++FH IH+TFAT GSDG  N WD  +K+RL    R    I    F+NDG+  A +  Y +      H P        + + Q T+ + KP++
Sbjct:  221 FKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG-----IFIRQVTDAETKPKS 325          

HSP 2 Score: 45.4394 bits (106), Expect = 3.537e-19
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:    2 TRCVAAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFHF 115
            TRC+ AFP++QG+++ SIEGRV V +LD S   Q K + F
Sbjct:  182 TRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAF 221          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: BUB3_PONAB (Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.889e-18
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  115 FKCHR----DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA 435
            FKCHR    +  +IY VN+++FH IH+TFAT GSDG  N WD  +K+RL    R    I    F+NDG+  A +  Y +      H P        + + Q T+ + KP++
Sbjct:  221 FKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG-----IFIRQVTDAETKPKS 325          

HSP 2 Score: 41.5874 bits (96), Expect = 4.889e-18
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 2
Query:    2 TRCVAAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFHF 115
            TRC+ AF ++QG+++ SIEGRV V +LD S   Q K + F
Sbjct:  182 TRCIRAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAF 221          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: BUB3_SCHPO (Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe GN=bub3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.233e-16
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  115 FKCHR----DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVC 330
            FKCHR    D   +Y VN L FHPIH T ATAG DG   FWD   ++RL+ ++     I   +FN DGS+ A + C
Sbjct:  220 FKCHRQIQKDYDIVYPVNDLKFHPIHQTLATAGGDGVVAFWDIQVRKRLRVLNPSKINISSISFNVDGSMLAIATC 295          

HSP 2 Score: 34.6538 bits (78), Expect = 4.233e-16
Identity = 19/40 (47.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:    2 TRCVAAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFHF 115
            TR V    + +GF+  SIEGR  V +++ SQ  QSKNF F
Sbjct:  181 TRSVCCNQNFEGFVSSSIEGRTSVEYINPSQEAQSKNFTF 220          
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Match: BUB3_DICDI (Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.813e-15
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  115 FKCHR---DGSEI-YSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNP 366
            FKCHR    G ++ Y VN + F+P + TFAT G D    FWD  +++RL A+      I   +FN DG+I A +  Y + +G ++H P
Sbjct:  226 FKCHRLTESGVDVVYPVNCIAFNPHYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSISSMSFNTDGNILAVASSYTFEEGEKDHPP 313          

HSP 2 Score: 37.3502 bits (85), Expect = 5.813e-15
Identity = 16/40 (40.00%), Postives = 25/40 (62.50%), Query Frame = 2
Query:    2 TRCVAAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFHF 115
            TRC+  F D +G+ + S+EGR+ + + D S   QSK + F
Sbjct:  187 TRCIRTFTDGKGYALASVEGRIAMEYFDPSPAVQSKKYAF 226          
The following BLAST results are available for this feature:
BLAST of BQ623072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RAE1L_RAT5.140e-2950.00mRNA export factor OS=Rattus norvegicus GN=Rae1 PE... [more]
NPP17_CAEEL6.837e-2138.78Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17... [more]
GLE2_YEAST3.662e-2042.74Nucleoporin GLE2 OS=Saccharomyces cerevisiae GN=GL... [more]
BUB3_HUMAN3.536e-1936.94Mitotic checkpoint protein BUB3 OS=Homo sapiens GN... [more]
BUB3_MOUSE3.537e-1936.94Mitotic checkpoint protein BUB3 OS=Mus musculus GN... [more]
BUB3_BOVIN3.537e-1936.94Mitotic checkpoint protein BUB3 OS=Bos taurus GN=B... [more]
BUB3_PONAB4.889e-1836.94Mitotic checkpoint protein BUB3 OS=Pongo abelii GN... [more]
BUB3_SCHPO4.233e-1646.05Mitotic checkpoint protein bub3 OS=Schizosaccharom... [more]
BUB3_DICDI5.813e-1538.64Mitotic checkpoint protein bub3 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00163 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00163 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623072 ID=BQ623072; Name=BQ623072; organism=Citrus sinensis; type=EST; length=731bp
GACGAGATGTGTTGCTGCCTTTCCTGACCAGCAAGGTTTCTTGGTTGGTT
CAATTGAGGGAAGGGTTGGTGTTCATCATCTTGATGATTCACAGCAAAGT
AAGAACTTTCACTTTTCAAATGCCACAGAGATGGTAGTGAGATATACTCA
GTCAACTCATTGAACTTCCACCCTATACATCACACTTTTGCAACCGCTGG
ATCTGATGGTGCATTTAATTTTTGGGACAAGGATAGTAAACAGCGGCTCA
AGGCCATGTCAAGGTGCGGGCAACCTATACCTTGCAGTACATTCAATAAT
GATGGCTCAATATTTGCGTACTCGGTGTGTTATGACTGGAGTAAGGGTGC
AGAAAATCACAACCCTGCAACAGCAAAGACTTACATCTATCTGCACTTGC
CACAGGAGACTGAGGTTAAAGGCAAACCACGGGCTGGGACAAGCGGGAGA
AAGTAAAGCTGCTTTTGGGCTGAGAGCATTACATATGGAAGCTTTATGAT
GAGAATTTCCTACCACCCCCTACCCCCTTCATGTCACGATAGCATTTTCT
GTTTCTTCCCAGCATTCGTAAATGAATGAGATGTGGGTTCTTGTTGTCAA
TAGAGAAGTCTAGATTAGGATTTAGGAATGAGGGTATTGAGAGGGTCAAT
GTTTTTAATATCCCTGGCCAGAGATGAAATTTTTCCAGATGAGCATTAAA
TTTAATCTTTTGACTTAGTTGTTTCAATGCT
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