BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8441 contig Csv1_Contig8441:179..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBCH (50S ribosomal protein L27 OS=Vibrio cholerae GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.021e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL +G+VKFE    + RK+V +E  E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBC3 (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.021e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL +G+VKFE    + RK+V +E  E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBFM (50S ribosomal protein L27 OS=Vibrio fischeri (strain MJ11) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.333e-24
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSEGKVKFEVKGPKNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBF1 (50S ribosomal protein L27 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.333e-24
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSEGKVKFEVKGPKNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.333e-24
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +G+GKDHTL+ALK+G+V+F+      RK+V +
Sbjct:    2 AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFALKDGKVQFDVKGPKNRKFVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBVY (50S ribosomal protein L27 OS=Vibrio vulnificus (strain YJ016) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.274e-24
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL +G+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTQFHAGNNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBVU (50S ribosomal protein L27 OS=Vibrio vulnificus GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.274e-24
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL +G+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTQFHAGNNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SERP5 (50S ribosomal protein L27 OS=Serratia proteamaculans (strain 568) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.274e-24
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+ALK+G+VKFE    S RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGKDHTLFALKDGKVKFEVKGPSNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.274e-24
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VG+GKDHTL+AL +G V F++ K + R +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFALSKGMVSFQR-KANNRSYVSVIP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ALISL (50S ribosomal protein L27 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.970e-24
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL EG+VKFE      RK+V ++
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSEGKVKFEVKGPKNRKFVSID 83          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_VIBCH1.021e-2463.5350S ribosomal protein L27 OS=Vibrio cholerae GN=rp... [more]
RL27_VIBC31.021e-2463.5350S ribosomal protein L27 OS=Vibrio cholerae serot... [more]
RL27_VIBFM1.333e-2465.8550S ribosomal protein L27 OS=Vibrio fischeri (stra... [more]
RL27_VIBF11.333e-2465.8550S ribosomal protein L27 OS=Vibrio fischeri (stra... [more]
RL27_ALTMD1.333e-2465.4350S ribosomal protein L27 OS=Alteromonas macleodii... [more]
RL27_VIBVY2.274e-2464.6350S ribosomal protein L27 OS=Vibrio vulnificus (st... [more]
RL27_VIBVU2.274e-2464.6350S ribosomal protein L27 OS=Vibrio vulnificus GN=... [more]
RL27_SERP52.274e-2464.6350S ribosomal protein L27 OS=Serratia proteamacula... [more]
RL27_BARHE2.274e-2466.2750S ribosomal protein L27 OS=Bartonella henselae G... [more]
RL27_ALISL2.970e-2464.6350S ribosomal protein L27 OS=Aliivibrio salmonicid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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