BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_OCHA4 (50S ribosomal protein L27 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.248e-22
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V+P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATTNGSVSF-RTKANGRTYVSVDP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SPHWW (50S ribosomal protein L27 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GS++NGRDS  + LGVKKFGGE VI GNII+RQRGT+ +PG  VG+GKDHTL+AL +GRV F   KL GRK+V V+
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGGELVIGGNIIIRQRGTKVYPGRNVGIGKDHTLFALTDGRVAFHSGKL-GRKYVSVD 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHOPT (50S ribosomal protein L27 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  K LGVK FGGE VIPGNII RQRGT++HPG  VGMG DHTL+A  EGRV+F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSAGKRLGVKAFGGEHVIPGNIIARQRGTQWHPGLNVGMGTDHTLFAKVEGRVEF-RAKANGRTYVSVLP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHOPA (50S ribosomal protein L27 OS=Rhodopseudomonas palustris GN=rpmA PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  K LGVK FGGE VIPGNII RQRGT++HPG  VGMG DHTL+A  EGRV+F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSAGKRLGVKAFGGEHVIPGNIIARQRGTQWHPGLNVGMGTDHTLFAKVEGRVEF-RAKANGRTYVSVLP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSYCK (50S ribosomal protein L27 OS=Psychrobacter cryohalolentis (strain K5) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK AGS++NGRDS PK LGVK FGG+ ++ GNIIVRQRGT FH G+ VGMG+DHTL+AL +G VKF       R++V VE
Sbjct:    2 AHKKAAGSSRNGRDSNPKMLGVKIFGGQAIVAGNIIVRQRGTEFHAGEGVGMGRDHTLFALNDGVVKFATKGKFNRRYVMVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSYA2 (50S ribosomal protein L27 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK AGS++NGRDS PK LGVK FGG+ ++ GNIIVRQRGT FH G+ VGMG+DHTL+AL +G VKF       R++V VE
Sbjct:    2 AHKKAAGSSRNGRDSNPKMLGVKIFGGQAIVAGNIIVRQRGTEFHAGEGVGMGRDHTLFALNDGVVKFATKGKFNRRYVMVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSEFS (50S ribosomal protein L27 OS=Pseudomonas fluorescens (strain SBW25) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GST+NGRDS+ K LGVK +GG+++IPGNIIVRQRGT+FH G  VGMGKDHTL+A  EG +KFE      R++V V
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKMYGGQKIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFAKIEGVIKFEVKGAFNRRYVSV 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MARMS (50S ribosomal protein L27 OS=Marinomonas sp. (strain MWYL1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE-KHKLSGR 301
            A KK  GST+NGRDS+ K LGVK+FGG+ VIPGNI+VRQRGT+FHPG  V +GKDHTL+A+ EG+VKFE K KL  R
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGQVVIPGNILVRQRGTQFHPGVGVQIGKDHTLFAVVEGQVKFEVKGKLKRR 78          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MAGSM (50S ribosomal protein L27 OS=Magnetococcus sp. (strain MC-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GS++NGRDS+ + LGVKK+GGE VIPGNI+VRQRGT+  PG  VGMGKDHTL+AL+EGRV F   +   R++V+VE
Sbjct:    2 AHKKAGGSSRNGRDSEGRRLGVKKYGGENVIPGNILVRQRGTKMWPGVGVGMGKDHTLFALEEGRVAFTMRR--NRQYVNVE 81          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_AZOVD (50S ribosomal protein L27 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS+ K LGVK FGG+ +  GNIIVRQRGT+FHPG  VG+GKDHTL+A  EG VKFE     GR++V V P
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKIFGGQAIRAGNIIVRQRGTQFHPGFGVGIGKDHTLFAKVEGVVKFEVKGAFGRRYVSVVP 84          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_OCHA41.248e-2261.4550S ribosomal protein L27 OS=Ochrobactrum anthropi... [more]
RL27_SPHWW1.629e-2264.6350S ribosomal protein L27 OS=Sphingomonas wittichi... [more]
RL27_RHOPT1.629e-2265.0650S ribosomal protein L27 OS=Rhodopseudomonas palu... [more]
RL27_RHOPA1.629e-2265.0650S ribosomal protein L27 OS=Rhodopseudomonas palu... [more]
RL27_PSYCK1.629e-2262.2050S ribosomal protein L27 OS=Psychrobacter cryohal... [more]
RL27_PSYA21.629e-2262.2050S ribosomal protein L27 OS=Psychrobacter arcticu... [more]
RL27_PSEFS1.629e-2262.9650S ribosomal protein L27 OS=Pseudomonas fluoresce... [more]
RL27_MARMS1.629e-2268.8350S ribosomal protein L27 OS=Marinomonas sp. (stra... [more]
RL27_MAGSM1.629e-2263.4150S ribosomal protein L27 OS=Magnetococcus sp. (st... [more]
RL27_AZOVD1.629e-2263.8650S ribosomal protein L27 OS=Azotobacter vinelandi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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