BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_KLEP3 (50S ribosomal protein L27 OS=Klebsiella pneumoniae (strain 342) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+AL +G+VKFE      RK++ +
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFALTDGKVKFEVKGPKNRKFISI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUSU (50S ribosomal protein L27 OS=Brucella suis GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUSI (50S ribosomal protein L27 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUO2 (50S ribosomal protein L27 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUMB (50S ribosomal protein L27 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUC2 (50S ribosomal protein L27 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUAB (50S ribosomal protein L27 OS=Brucella abortus GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUA2 (50S ribosomal protein L27 OS=Brucella abortus (strain 2308) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRUA1 (50S ribosomal protein L27 OS=Brucella abortus (strain S19) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNIIVRQRGT++HPG  VG+GKDHT++A   G V F + K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSF-RTKANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BEII9 (50S ribosomal protein L27 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHTL+AL  G+V F+  K +GR ++ V P
Sbjct:    2 AHKKAGGSSRNGRDSDGRRLGVKKFGGEAVIGGNIIVRQRGTKWHPGSNVGIGKDHTLFALTAGQVFFQT-KANGRSYISVIP 83          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_KLEP32.779e-2260.4950S ribosomal protein L27 OS=Klebsiella pneumoniae... [more]
RL27_BRUSU2.779e-2261.4550S ribosomal protein L27 OS=Brucella suis GN=rpmA... [more]
RL27_BRUSI2.779e-2261.4550S ribosomal protein L27 OS=Brucella suis (strain... [more]
RL27_BRUO22.779e-2261.4550S ribosomal protein L27 OS=Brucella ovis (strain... [more]
RL27_BRUMB2.779e-2261.4550S ribosomal protein L27 OS=Brucella melitensis b... [more]
RL27_BRUC22.779e-2261.4550S ribosomal protein L27 OS=Brucella canis (strai... [more]
RL27_BRUAB2.779e-2261.4550S ribosomal protein L27 OS=Brucella abortus GN=r... [more]
RL27_BRUA22.779e-2261.4550S ribosomal protein L27 OS=Brucella abortus (str... [more]
RL27_BRUA12.779e-2261.4550S ribosomal protein L27 OS=Brucella abortus (str... [more]
RL27_BEII92.779e-2262.6550S ribosomal protein L27 OS=Beijerinckia indica s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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