BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8441 contig Csv1_Contig8441:179..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHILO (50S ribosomal protein L27 OS=Rhizobium loti GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  K LGVKKFGGE VIPGNII+RQRGT +HPG  VGMG DHTL+AL+ G V F K K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSHSKRLGVKKFGGEAVIPGNIIIRQRGTTWHPGVNVGMGTDHTLFALESGAVTFNK-KANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PHOPR (50S ribosomal protein L27 OS=Photobacterium profundum GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL +G+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTNNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVTIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAEPS (50S ribosomal protein L27 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAEDU (50S ribosomal protein L27 OS=Haemophilus ducreyi GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEB9 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS195) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEB8 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS185) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEB5 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEB2 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS223) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MARMM (50S ribosomal protein L27 OS=Maricaulis maris (strain MCS10) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVKK+GG+ VIPGNIIVRQRGT+ +PG  VGMGKDHTL+AL EGRV F K K  G+ +V VEP
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKYGGQEVIPGNIIVRQRGTKVNPGANVGMGKDHTLFALTEGRVVFAK-KSGGKAFVSVEP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_COLP3 (50S ribosomal protein L27 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK AGST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH G  +G+GKDHTL+AL +G+V+FE      RK+V +
Sbjct:    2 AHKKAAGSTRNGRDSEAKRLGVKRFGGESVLAGNIIVRQRGTRFHAGSNMGIGKDHTLFALSDGKVQFEVKGPKSRKFVSI 82          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_RHILO6.616e-2466.2750S ribosomal protein L27 OS=Rhizobium loti GN=rpm... [more]
RL27_PHOPR6.616e-2464.6350S ribosomal protein L27 OS=Photobacterium profun... [more]
RL27_HAEPS6.616e-2464.2050S ribosomal protein L27 OS=Haemophilus parasuis ... [more]
RL27_HAEDU6.616e-2464.2050S ribosomal protein L27 OS=Haemophilus ducreyi G... [more]
RL27_SHEB98.640e-2462.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_SHEB88.640e-2462.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_SHEB58.640e-2462.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_SHEB28.640e-2462.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_MARMM8.640e-2466.2750S ribosomal protein L27 OS=Maricaulis maris (str... [more]
RL27_COLP38.640e-2464.2050S ribosomal protein L27 OS=Colwellia psychreryth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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